source: plugins/base2

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Diff Rev Age Author Log Message
(edit) @739   15 years Martin Svensson Added new files to the project such as license file, library-files and …
(edit) @738   15 years Martin Svensson Added BASE2WSClient.jar to svn:ignore
(edit) @737   15 years Martin Svensson Fixes #121 BGX-importer should 0-pad Array_Address_ID if the BGX-file …
(edit) @736   15 years Martin Svensson Fixes #112. Changed the property validation when installing a data …
(edit) @735   15 years Martin Svensson Correct the layout
(edit) @734   15 years Martin Svensson Changed the svn-properties so the pages can be viewed in the wiki
(edit) @733   15 years Martin Svensson References #122 Created README and INSTALL pages for the Normalization …
(edit) @732   15 years Martin Svensson References #112 Changed the exception message.
(edit) @731   15 years Martin Svensson Re-arrange in build file for the Normalization plug-in package.
(edit) @730   15 years Martin Svensson References #117 Average normalization plug-in is almost done. The …
(edit) @729   15 years Martin Svensson References #117 Almost done with implementing the normalization …
(edit) @728   15 years Martin Svensson Re-arrange the files. Created the plug-in body for average and cubic …
(edit) @727   15 years Martin Svensson First commit of the normalization package. Contains folder structure, …
(edit) @726   15 years Martin Svensson
(edit) @725   15 years Martin Svensson
(edit) @724   15 years Martin Svensson
(edit) @723   15 years Martin Svensson Added a folder for the normalization package.
(edit) @718   15 years Jari Häkkinen Also share manifest file.
(edit) @703   15 years Jari Häkkinen Preparing for future 1.2 release
(edit) @702   15 years Jari Häkkinen Tagging release 1.1
(edit) @701   15 years Jari Häkkinen Preparing release of Illumina plug-in package 1.1
(edit) @700   15 years Jari Häkkinen Improved description.
(edit) @699   15 years Jari Häkkinen Added two new plugins to the list of plugins. Alphabetized list.
(edit) @698   15 years Jari Häkkinen Fixes #110.
(edit) @689   15 years Jari Häkkinen Addresses #110. Added MAD based outlier removal of negative control …
(edit) @688   15 years Jari Häkkinen Typo
(edit) @686   15 years Jari Häkkinen Addresses #110.
(edit) @685   15 years Jari Häkkinen Improved text.
(edit) @684   15 years Jari Häkkinen Fixes #104. Docs already fixed, added build check.
(edit) @681   15 years Jari Häkkinen Addresses #110. Single sample Whole Genome BeadChips? detection P-value …
(edit) @680   15 years Jari Häkkinen Bumped version number to pre1.1
(edit) @679   15 years Jari Häkkinen Moving flush call to a more appropriate place.
(edit) @678   15 years Jari Häkkinen No configurations for BeadSummaryImporter?
(edit) @677   15 years mbayer tidied up -- minor changes
(edit) @676   15 years mbayer removed deprecated code for raw bioassay creation and replaced with …
(edit) @675   15 years mbayer default values for update existing parameter changed
(edit) @674   15 years mbayer changed the way the zip file input stream is obtained back to how it was
(edit) @673   15 years mbayer updated
(edit) @672   15 years mbayer removed default values for most inputs
(edit) @671   15 years mbayer added code for copying over the two additional required jar files …
(edit) @670   15 years mbayer - build script tidied up - new BASE libs added and existing ones …
(edit) @669   15 years Jari Häkkinen Adding background correction plugin
(edit) @660   15 years Jari Häkkinen Alphabetized list and fixed indendation.
(edit) @659   15 years mbayer fixed two minor errors in build script
(edit) @655   15 years mbayer deleted this jar file -- it does not get updated! need to use …
(edit) @654   15 years mbayer have made a number of changes relating to Affy support and fixed …
(edit) @650   15 years Nicklas Nordborg Preparing for future release 2.X
(edit) @649   15 years Nicklas Nordborg Tagging release 2.6
(edit) @648   15 years Nicklas Nordborg Preparing relase 2.6
(edit) @647   15 years Nicklas Nordborg References #105: Complete the move of the example code from BASE. …
(edit) @646   15 years Jari Häkkinen Fixing copyright lines.
(edit) @645   15 years Jari Häkkinen Updated the BASE core jar requirements.
(edit) @644   15 years mbayer have added a progress bar to the userchoice3.jsp page to warn the user …
(edit) @643   15 years mbayer code base simplified -- no longer supporting autogenerate option and …
(edit) @640   16 years mbayer test file commit -- having trouble committing into the new repo
(edit) @639   16 years mbayer simplified the workflow and inputs
(edit) @634   16 years Nicklas Nordborg Added release procedure instructions.
(edit) @633   16 years Nicklas Nordborg Changes for future release 1.1
(edit) @632   16 years Nicklas Nordborg Tagging release 1.0
(edit) @631   16 years Nicklas Nordborg References #91: Import Illumina Bead Summary(IBS) files as raw data …
(edit) @630   16 years Nicklas Nordborg References #94: Import reporter annotations from bgx files Added …
(edit) @629   16 years Nicklas Nordborg References #89: Installation program and documentation Preparing for …
(edit) @628   16 years Nicklas Nordborg References #89: Installation program and documentation Made the SNP …
(edit) @627   16 years Nicklas Nordborg References #89: Installation program and documentation Added readme …
(edit) @626   16 years Nicklas Nordborg References #89, #100: Added formulas for better SNP gui. Gtype = …
(edit) @625   16 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data Added …
(edit) @624   16 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data The main …
(edit) @623   16 years Martin Svensson Fixes #100. Add Illumina SNP platform to the installation program
(edit) @622   16 years Martin Svensson References #101comment:9 - fixes the listed items in the comment.
(edit) @621   16 years Nicklas Nordborg Removed unused imports
(edit) @620   16 years Martin Svensson Fixes #93 Added some more javadoc and improved the code format in a …
(edit) @619   16 years Martin Svensson Fixes #101. The plug-in tested both from raw bioassay-listview and …
(edit) @618   16 years Martin Svensson References #101. The import is now done. Code needs to be cleaned up …
(edit) @617   16 years Martin Svensson References #101. Creating RawBioAssays? and split up files. The data …
(edit) @611   16 years Nicklas Nordborg Moving tab2mageimporter branch to the new location
(edit) @610   16 years Nicklas Nordborg Moving affymetrix 0.7 tag to new location
(edit) @609   16 years Nicklas Nordborg Moving affymetrix 0.6 tag to new location
(edit) @607   16 years Nicklas Nordborg Moving batchimporter project to new location
(edit) @606   16 years Nicklas Nordborg Moving tab2mage project to new location
(edit) @604   16 years Nicklas Nordborg Moving se.lu.thep.affymetrix project to new location
(edit) @602   16 years Nicklas Nordborg Removed trunk folders that prevents moving the projects
(edit) @601   16 years Nicklas Nordborg Moving Illumina project to new location (second try)
(edit) @600   16 years Nicklas Nordborg Copied to incorrect directory
(edit) @599   16 years Nicklas Nordborg Moving Illumina project to new location
(add) @598   16 years Nicklas Nordborg Preparing new directory structure
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