|
|
|
@975
|
15 years |
Martin Svensson |
References #119 Some changes in the calculation-part. The plug-in runs …
|
|
|
|
@973
|
15 years |
Jari Häkkinen |
Addresses #118. Required yat version is 0.5 or later
|
|
|
|
@972
|
15 years |
Jari Häkkinen |
Addresses #118. Load of java wrapper works but manual install of …
|
|
|
|
@971
|
15 years |
Martin Svensson |
Added library-files to the ignore-list
|
|
|
|
@970
|
15 years |
Martin Svensson |
Preparing for future release Illumina package v1.4
|
|
|
|
@969
|
15 years |
Martin Svensson |
Tagging release 1.3
|
|
|
|
@968
|
15 years |
Martin Svensson |
Preparing release 1.3
|
|
|
|
@967
|
15 years |
Martin Svensson |
References #119 The plug-in is mostly ready for testing
|
|
|
|
@966
|
15 years |
Martin Svensson |
References #119 Part of the normalization algorithm is implemented
|
|
|
|
@965
|
15 years |
Jari Häkkinen |
Corrected flags summary output
|
|
|
|
@964
|
15 years |
Jari Häkkinen |
Added support to add qQN source to the normalizer package.
|
|
|
|
@963
|
15 years |
Jari Häkkinen |
Improved configure.ac and added option to disable check on required libs.
|
|
|
|
@962
|
15 years |
Jari Häkkinen |
Added missing include statement.
|
|
|
|
@961
|
15 years |
Jari Häkkinen |
Refs #118 and #161. PluginUtilities? download support. Added distclean …
|
|
|
|
@960
|
15 years |
Jari Häkkinen |
Refs #118. Changes suggested by the yat developer team.
|
|
|
|
@959
|
15 years |
Martin Svensson |
Fixes #164 Improve documentation on how to upgrade the illumina …
|
|
|
|
@958
|
15 years |
Martin Svensson |
Fixes #177 Add information about how to upgrade the normalization package.
|
|
|
|
@957
|
15 years |
Nicklas Nordborg |
Fixes #175: Update the ant script to include contrib directory when …
|
|
|
|
@956
|
15 years |
Jari Häkkinen |
Removed stray character in configure.ac
|
|
|
|
@955
|
15 years |
Jari Häkkinen |
Refs #118. Changes suggested by the yat developer team.
|
|
|
|
@954
|
15 years |
Jari Häkkinen |
Refs #118. Changes suggested by the yat developer team.
|
|
|
|
@953
|
15 years |
Jari Häkkinen |
Refs #118. Changes suggested by the yat developer team.
|
|
|
|
@952
|
15 years |
Jari Häkkinen |
Addresses #118. Added underlying C++ binary for the qQuantile.
|
|
|
|
@951
|
15 years |
Martin Svensson |
References #119 Added plugin-class. The plugin doesn't really do …
|
|
|
|
@950
|
15 years |
Martin Svensson |
References #119 Moved some method from the QuantileNormalization? …
|
|
|
|
@949
|
15 years |
Martin Svensson |
Fixes #176 Create release document
|
|
|
|
@948
|
15 years |
Martin Svensson |
Fixes #168 MD5 sum should be automatically generated for a package
|
|
|
|
@947
|
15 years |
Martin Svensson |
Fixes #166 (net.sf.basedb.normalizers) Automatic progression of …
|
|
|
|
@946
|
15 years |
Martin Svensson |
References #161 Set external jar-files to be ignored
|
|
|
|
@945
|
15 years |
Martin Svensson |
Fixes #161 (net.sf.basedb.normalizers) Automatic download of BASE API
|
|
|
|
@944
|
15 years |
Martin Svensson |
References #173 The 'float to integer' conversion has been removed but …
|
|
|
|
@943
|
15 years |
Martin Svensson |
Fixes #171 IBS raw data importer should be able to handle floats in …
|
|
|
|
@942
|
15 years |
Martin Svensson |
Fixes #170 Result dialouge after batch importing several raw bioassays …
|
|
|
|
@941
|
15 years |
Martin Svensson |
References #174 license text should referr to the Illumina plug-in package
|
|
|
|
@940
|
15 years |
Martin Svensson |
Fixes #174 Change license to GPL 3 for the illumina package
|
|
|
|
@938
|
15 years |
Jari Häkkinen |
Added svn property.
|
|
|
|
@937
|
15 years |
Jari Häkkinen |
Added beadstudio data to IBS data converter.
|
|
|
|
@935
|
15 years |
Jari Häkkinen |
Removing braches.
|
|
|
|
@934
|
15 years |
Jari Häkkinen |
Tagging version 1.0 of the net.sf.basedb.normalizers.
|
|
|
|
@933
|
15 years |
Jari Häkkinen |
Corrected spelling
|
|
|
|
@932
|
15 years |
Jari Häkkinen |
Addresses #120.
|
|
|
|
@931
|
15 years |
Jari Häkkinen |
Addresses #120. Preparing 1.0 release.
|
|
|
|
@930
|
15 years |
Jari Häkkinen |
Typo
|
|
|
|
@929
|
15 years |
Jari Häkkinen |
Removing CubicSplineNormalization? stub.
|
|
|
|
@928
|
15 years |
Jari Häkkinen |
Fixes #167. Now using geometric mean
|
|
|
|
@927
|
15 years |
Jari Häkkinen |
Refs #165.
|
|
|
|
@926
|
15 years |
Jari Häkkinen |
Fixes #165. Simply renamed rank invariant to quantile and made …
|
|
|
|
@925
|
15 years |
Jari Häkkinen |
Improved README.
|
|
|
|
@924
|
15 years |
Jari Häkkinen |
|
|
|
|
@923
|
15 years |
Martin Svensson |
References #163 Disregard the last commit. This will do instead.
|
|
|
|
@922
|
15 years |
Martin Svensson |
References #163 The sorting of spotdata should be stable now. Please …
|
|
|
|
@918
|
15 years |
Jari Häkkinen |
Removed stray lines.
|
|
|
|
@914
|
15 years |
Nicklas Nordborg |
Adding note about checking that the information on the download page …
|
|
|
|
@913
|
15 years |
Nicklas Nordborg |
Preparing for future release 1.3
|
|
|
|
@912
|
15 years |
Nicklas Nordborg |
Tagging Illumina package 1.2
|
|
|
|
@911
|
15 years |
Nicklas Nordborg |
Preparing release of Illumina package 1.2
|
|
|
|
@910
|
15 years |
Jari Häkkinen |
Changing normalizer package license to GPL3.
|
|
|
|
@909
|
15 years |
Jari Häkkinen |
Addresses #120.
|
|
|
|
@906
|
15 years |
Jari Häkkinen |
Some external binary will output result to stdout ... optionally …
|
|
|
|
@891
|
15 years |
Jari Häkkinen |
Changed interface and added debug code.
|
|
|
|
@890
|
15 years |
Jari Häkkinen |
Added debug code.
|
|
|
|
@873
|
15 years |
Nicklas Nordborg |
Fixes #151: Use two queries instead of one in DetectionPValue.run() method
|
|
|
|
@862
|
15 years |
Jari Häkkinen |
Cleanup of the abstract super class. More to come …
|
|
|
|
@861
|
15 years |
Jari Häkkinen |
Using BASE 2.9 API
|
|
|
|
@847
|
15 years |
Jari Häkkinen |
Renamed package to PluginUtilities?.
|
|
|
|
@833
|
15 years |
Nicklas Nordborg |
Fixes #150: Fix layout of DetectionPValue.java
|
|
|
|
@829
|
15 years |
Jari Häkkinen |
Setting svndigest:ignore on copies of trunks to avoid multiple counting.
|
|
|
|
@818
|
15 years |
Jari Häkkinen |
First commit of the AbstractRunBinaryPlugin? class. Still very …
|
|
|
|
@817
|
15 years |
Jari Häkkinen |
Fixing typo.
|
|
|
|
@816
|
15 years |
Martin Svensson |
References #143 Removed unnecessary comments.
|
|
|
|
@815
|
15 years |
Martin Svensson |
Fixes #143 Illumina plug-in package installer requests wrong permissions
|
|
|
|
@814
|
15 years |
Nicklas Nordborg |
References #142. Removed problematic character. For historical reasons …
|
|
|
|
@813
|
15 years |
Martin Svensson |
Fixes #142 Illumina installer plugin cannot be installed in some cases
|
|
|
|
@812
|
15 years |
Jari Häkkinen |
Creating a new package.
|
|
|
|
@811
|
15 years |
Martin Svensson |
Fixes #141 Rank invariant should not support configurations. The …
|
|
|
|
@810
|
15 years |
Nicklas Nordborg |
Fixes #138: Importing data for multiple raw bioassays in one step
|
|
|
|
@809
|
15 years |
Nicklas Nordborg |
Updated release doc so we don't forget version information in …
|
|
|
|
@808
|
15 years |
Nicklas Nordborg |
References #110: Illumina detection P-value plug-in
Static method in …
|
|
|
|
@807
|
15 years |
Nicklas Nordborg |
Fixes #140: Add support in build.xml for automatic download of BASE …
|
|
|
|
@755
|
15 years |
Martin Svensson |
Fixed weaknesses discovered with FindBugs?-eclipse plug-in
|
|
|
|
@754
|
15 years |
Martin Svensson |
References #119 Change to only create a row summary array if it has …
|
|
|
|
@753
|
15 years |
Martin Svensson |
The SpotData2Ch objects are now compared by their ratio-value and not …
|
|
|
|
@752
|
15 years |
Martin Svensson |
Fixes #119 Create Rank Invariant normalization
|
|
|
|
@751
|
15 years |
Martin Svensson |
References #119 Bug-fixing
|
|
|
|
@750
|
15 years |
Martin Svensson |
References # 119 The normalization algorithm is almost done. Some …
|
|
|
|
@749
|
15 years |
Martin Svensson |
References # 119 Started with the development of this plug-in. No …
|
|
|
|
@748
|
15 years |
Martin Svensson |
Fixes #117 Create average nomralization plug-in.
|
|
|
|
@747
|
15 years |
Martin Svensson |
References #124 Corrected a few more copy-paste mistake.
|
|
|
|
@746
|
15 years |
Martin Svensson |
Fixes #124 Corrected a copy-paste mistake. Also added …
|
|
|
|
@745
|
15 years |
Martin Svensson |
References #117 Bug-fixing
|
|
|
|
@744
|
15 years |
Martin Svensson |
References #117 Corrected a package name. Also changed the way global …
|
|
|
|
@743
|
15 years |
Martin Svensson |
References #117 The normalization is now done. Nothing has been tested …
|
|
|
|
@742
|
15 years |
Martin Svensson |
References #117 Cleaned up and refactored the classes. The Avg.norm. …
|
|
|
|
@740
|
15 years |
Martin Svensson |
Change name of the package
|
|
|
|
@739
|
15 years |
Martin Svensson |
Added new files to the project such as license file, library-files and …
|
|
|
|
@738
|
15 years |
Martin Svensson |
Added BASE2WSClient.jar to svn:ignore
|
|
|
|
@737
|
15 years |
Martin Svensson |
Fixes #121 BGX-importer should 0-pad Array_Address_ID if the BGX-file …
|
|
|
|
@736
|
15 years |
Martin Svensson |
Fixes #112. Changed the property validation when installing a data …
|
|
|
|
@735
|
15 years |
Martin Svensson |
Correct the layout
|
|
|
|
@734
|
15 years |
Martin Svensson |
Changed the svn-properties so the pages can be viewed in the wiki
|
|
|
|
