source: plugins

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Diff Rev Age Author Log Message
(edit) @1023   14 years Jari Häkkinen Addresses #197. In anticipation of abort functionality the underlying …
(edit) @1022   14 years Jari Häkkinen Fixes #184. Progress bar is updated in the abstract class only.
(edit) @1020   14 years Jari Häkkinen Addresses #118 and fixes #187.
(edit) @1014   14 years Jari Häkkinen Fixes #191. Added standard options and also assay annotation data file …
(edit) @1009   14 years Jari Häkkinen Removed non-used configure options inherited from the WeNNI package.
(edit) @1008   14 years Jari Häkkinen Clarified where the recommended install directory is located.
(edit) @1007   14 years Jari Häkkinen metadata is split into reporter and assay metadata. Added flags to …
(edit) @1006   14 years Jari Häkkinen metadata is split into reporter and assay metadata.
(edit) @1005   14 years Jari Häkkinen storeValues typo! Plural importantsvn diff
(edit) @1004   14 years Jari Häkkinen Removed warning suppressions, clean up of code, added missing …
(edit) @1003   14 years Jari Häkkinen Added support to select assays ... but the select is not used yet.
(edit) @1002   14 years Jari Häkkinen Added support to optionally select assays.
(edit) @1001   14 years Jari Häkkinen Minor changes to debug_option.
(edit) @1000   14 years Jari Häkkinen storeResult interface change, some code moved to super class.
(edit) @999   14 years Jari Häkkinen Restructured result storage.
(edit) @998   14 years Jari Häkkinen Addresses #118 and #183. Moved export of data to an export method.
(edit) @997   15 years Jari Häkkinen Tagging version 1.1 of VirtualArray?.
(edit) @996   15 years Jari Häkkinen Preparing release 1.1 of VirtualArray?.
(edit) @993   15 years Jari Häkkinen Addresses #118. First version of working qQuantileNormalizer.
(edit) @992   15 years Jari Häkkinen Require BASE 2.5. Restructure build script.
(edit) @991   15 years Jari Häkkinen Minor things.
(edit) @990   15 years Jari Häkkinen Typo.
(edit) @989   15 years Jari Häkkinen Missing values from BASE are empty fields, need to define field …
(edit) @984   15 years Jari Häkkinen Added support to write to stdin of underlying binary ... added missing …
(edit) @983   15 years Jari Häkkinen Added support to write to stdin of underlying binary.
(edit) @981   15 years Martin Svensson Changed requirements to version 2.9 of BASE both in documentation and …
(edit) @979   15 years Jari Häkkinen 2.9 BASE core API required since changeset:975
(edit) @977   15 years Martin Svensson References #119 Corrected the calculation of relative rank between …
(edit) @975   15 years Martin Svensson References #119 Some changes in the calculation-part. The plug-in runs …
(edit) @973   15 years Jari Häkkinen Addresses #118. Required yat version is 0.5 or later
(edit) @972   15 years Jari Häkkinen Addresses #118. Load of java wrapper works but manual install of …
(edit) @971   15 years Martin Svensson Added library-files to the ignore-list
(edit) @970   15 years Martin Svensson Preparing for future release Illumina package v1.4
(edit) @969   15 years Martin Svensson Tagging release 1.3
(edit) @968   15 years Martin Svensson Preparing release 1.3
(edit) @967   15 years Martin Svensson References #119 The plug-in is mostly ready for testing
(edit) @966   15 years Martin Svensson References #119 Part of the normalization algorithm is implemented
(edit) @965   15 years Jari Häkkinen Corrected flags summary output
(edit) @964   15 years Jari Häkkinen Added support to add qQN source to the normalizer package.
(edit) @963   15 years Jari Häkkinen Improved configure.ac and added option to disable check on required libs.
(edit) @962   15 years Jari Häkkinen Added missing include statement.
(edit) @961   15 years Jari Häkkinen Refs #118 and #161. PluginUtilities? download support. Added distclean …
(edit) @960   15 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @959   15 years Martin Svensson Fixes #164 Improve documentation on how to upgrade the illumina …
(edit) @958   15 years Martin Svensson Fixes #177 Add information about how to upgrade the normalization package.
(edit) @957   15 years Nicklas Nordborg Fixes #175: Update the ant script to include contrib directory when …
(edit) @956   15 years Jari Häkkinen Removed stray character in configure.ac
(edit) @955   15 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @954   15 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @953   15 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @952   15 years Jari Häkkinen Addresses #118. Added underlying C++ binary for the qQuantile.
(edit) @951   15 years Martin Svensson References #119 Added plugin-class. The plugin doesn't really do …
(edit) @950   15 years Martin Svensson References #119 Moved some method from the QuantileNormalization? …
(edit) @949   15 years Martin Svensson Fixes #176 Create release document
(edit) @948   15 years Martin Svensson Fixes #168 MD5 sum should be automatically generated for a package
(edit) @947   15 years Martin Svensson Fixes #166 (net.sf.basedb.normalizers) Automatic progression of …
(edit) @946   15 years Martin Svensson References #161 Set external jar-files to be ignored
(edit) @945   15 years Martin Svensson Fixes #161 (net.sf.basedb.normalizers) Automatic download of BASE API
(edit) @944   15 years Martin Svensson References #173 The 'float to integer' conversion has been removed but …
(edit) @943   15 years Martin Svensson Fixes #171 IBS raw data importer should be able to handle floats in …
(edit) @942   15 years Martin Svensson Fixes #170 Result dialouge after batch importing several raw bioassays …
(edit) @941   15 years Martin Svensson References #174 license text should referr to the Illumina plug-in package
(edit) @940   15 years Martin Svensson Fixes #174 Change license to GPL 3 for the illumina package
(edit) @938   15 years Jari Häkkinen Added svn property.
(edit) @937   15 years Jari Häkkinen Added beadstudio data to IBS data converter.
(edit) @936   15 years Peter Johansson add --force option in autoreconf call in bootstrap. The reason this is …
(edit) @935   15 years Jari Häkkinen Removing braches.
(edit) @934   15 years Jari Häkkinen Tagging version 1.0 of the net.sf.basedb.normalizers.
(edit) @933   15 years Jari Häkkinen Corrected spelling
(edit) @932   15 years Jari Häkkinen Addresses #120.
(edit) @931   15 years Jari Häkkinen Addresses #120. Preparing 1.0 release.
(edit) @930   15 years Jari Häkkinen Typo
(edit) @929   15 years Jari Häkkinen Removing CubicSplineNormalization? stub.
(edit) @928   15 years Jari Häkkinen Fixes #167. Now using geometric mean
(edit) @927   15 years Jari Häkkinen Refs #165.
(edit) @926   15 years Jari Häkkinen Fixes #165. Simply renamed rank invariant to quantile and made …
(edit) @925   15 years Jari Häkkinen Improved README.
(edit) @924   15 years Jari Häkkinen
(edit) @923   15 years Martin Svensson References #163 Disregard the last commit. This will do instead.
(edit) @922   15 years Martin Svensson References #163 The sorting of spotdata should be stable now. Please …
(edit) @918   15 years Jari Häkkinen Removed stray lines.
(edit) @914   15 years Nicklas Nordborg Adding note about checking that the information on the download page …
(edit) @913   15 years Nicklas Nordborg Preparing for future release 1.3
(edit) @912   15 years Nicklas Nordborg Tagging Illumina package 1.2
(edit) @911   15 years Nicklas Nordborg Preparing release of Illumina package 1.2
(edit) @910   15 years Jari Häkkinen Changing normalizer package license to GPL3.
(edit) @909   15 years Jari Häkkinen Addresses #120.
(edit) @908   15 years Jari Häkkinen Addresses #50. Running nni with phony weights.
(edit) @907   15 years Peter Johansson using ACLOCAL_AMFLAGS requires Automake 1.10
(edit) @906   15 years Jari Häkkinen Some external binary will output result to stdout ... optionally …
(edit) @905   15 years Peter Johansson WeNNI.java should be included in dist
(edit) @904   15 years Peter Johansson installing jars with chmod 644
(edit) @903   15 years Peter Johansson Style is everything
(edit) @902   15 years Peter Johansson timestamp of downloaded jar file will be old. Fixing deps to reflect …
(edit) @901   15 years Peter Johansson improve dependency
(edit) @900   15 years Jari Häkkinen Refs #159
(edit) @899   15 years Jari Häkkinen Address #159. Renaming BASE1 plugin definition and minor changes to …
(edit) @898   15 years Jari Häkkinen Adding URL.
(edit) @897   15 years Jari Häkkinen Correcting URL
(edit) @896   15 years Jari Häkkinen Refs #56. Removing branches and tags directories since they will never …
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