source: plugins

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Diff Rev Age Author Log Message
(edit) @723   14 years Martin Svensson Added a folder for the normalization package.
(edit) @721   14 years Jari Häkkinen Shuffling directory structure to the recommended trunk and tags.
(edit) @720   14 years Jari Häkkinen Importing CGH Data Dumper
(edit) @718   14 years Jari Häkkinen Also share manifest file.
(edit) @713   14 years Jari Häkkinen Made Smooth to look for parameter section as it is called in the base …
(edit) @712   14 years Jari Häkkinen Smooth requires additional jars to be included in the package. Removed …
(edit) @711   14 years Jari Häkkinen Fixes BASEfile serial spot section issue: The reader did not get …
(edit) @707   14 years Jari Häkkinen Getting Smooth to compile.
(edit) @706   14 years Jari Häkkinen Adding notes on how to create a package.
(edit) @705   14 years Jari Häkkinen Fixing svn property.
(edit) @704   14 years Jari Häkkinen Fixing svn property.
(edit) @703   14 years Jari Häkkinen Preparing for future 1.2 release
(edit) @702   14 years Jari Häkkinen Tagging release 1.1
(edit) @701   14 years Jari Häkkinen Preparing release of Illumina plug-in package 1.1
(edit) @700   14 years Jari Häkkinen Improved description.
(edit) @699   14 years Jari Häkkinen Added two new plugins to the list of plugins. Alphabetized list.
(edit) @698   14 years Jari Häkkinen Fixes #110.
(edit) @689   14 years Jari Häkkinen Addresses #110. Added MAD based outlier removal of negative control …
(edit) @688   14 years Jari Häkkinen Typo
(edit) @686   14 years Jari Häkkinen Addresses #110.
(edit) @685   14 years Jari Häkkinen Improved text.
(edit) @684   14 years Jari Häkkinen Fixes #104. Docs already fixed, added build check.
(edit) @681   14 years Jari Häkkinen Addresses #110. Single sample Whole Genome BeadChips? detection P-value …
(edit) @680   14 years Jari Häkkinen Bumped version number to pre1.1
(edit) @679   14 years Jari Häkkinen Moving flush call to a more appropriate place.
(edit) @678   14 years Jari Häkkinen No configurations for BeadSummaryImporter?
(edit) @677   14 years mbayer tidied up -- minor changes
(edit) @676   14 years mbayer removed deprecated code for raw bioassay creation and replaced with …
(edit) @675   14 years mbayer default values for update existing parameter changed
(edit) @674   14 years mbayer changed the way the zip file input stream is obtained back to how it was
(edit) @673   14 years mbayer updated
(edit) @672   14 years mbayer removed default values for most inputs
(edit) @671   14 years mbayer added code for copying over the two additional required jar files …
(edit) @670   14 years mbayer - build script tidied up - new BASE libs added and existing ones …
(edit) @669   14 years Jari Häkkinen Adding background correction plugin
(edit) @665   14 years Jari Häkkinen Added support for using configurable columns. Useful if BASE extra …
(edit) @664   14 years Jari Häkkinen Fixing problem with reading sections.
(edit) @663   14 years Jari Häkkinen Fixing compiler errors.
(edit) @662   14 years Jari Häkkinen Jar file name and class name wrong.
(edit) @660   14 years Jari Häkkinen Alphabetized list and fixed indendation.
(edit) @659   14 years mbayer fixed two minor errors in build script
(edit) @655   14 years mbayer deleted this jar file -- it does not get updated! need to use …
(edit) @654   14 years mbayer have made a number of changes relating to Affy support and fixed …
(edit) @650   14 years Nicklas Nordborg Preparing for future release 2.X
(edit) @649   14 years Nicklas Nordborg Tagging release 2.6
(edit) @648   14 years Nicklas Nordborg Preparing relase 2.6
(edit) @647   14 years Nicklas Nordborg References #105: Complete the move of the example code from BASE. …
(edit) @646   14 years Jari Häkkinen Fixing copyright lines.
(edit) @645   14 years Jari Häkkinen Updated the BASE core jar requirements.
(edit) @644   14 years mbayer have added a progress bar to the userchoice3.jsp page to warn the user …
(edit) @643   14 years mbayer code base simplified -- no longer supporting autogenerate option and …
(edit) @640   14 years mbayer test file commit -- having trouble committing into the new repo
(edit) @639   14 years mbayer simplified the workflow and inputs
(edit) @634   14 years Nicklas Nordborg Added release procedure instructions.
(edit) @633   14 years Nicklas Nordborg Changes for future release 1.1
(edit) @632   14 years Nicklas Nordborg Tagging release 1.0
(edit) @631   14 years Nicklas Nordborg References #91: Import Illumina Bead Summary(IBS) files as raw data …
(edit) @630   14 years Nicklas Nordborg References #94: Import reporter annotations from bgx files Added …
(edit) @629   14 years Nicklas Nordborg References #89: Installation program and documentation Preparing for …
(edit) @628   14 years Nicklas Nordborg References #89: Installation program and documentation Made the SNP …
(edit) @627   14 years Nicklas Nordborg References #89: Installation program and documentation Added readme …
(edit) @626   14 years Nicklas Nordborg References #89, #100: Added formulas for better SNP gui. Gtype = …
(edit) @625   14 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data Added …
(edit) @624   14 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data The main …
(edit) @623   14 years Martin Svensson Fixes #100. Add Illumina SNP platform to the installation program
(edit) @622   14 years Martin Svensson References #101comment:9 - fixes the listed items in the comment.
(edit) @621   14 years Nicklas Nordborg Removed unused imports
(edit) @620   14 years Martin Svensson Fixes #93 Added some more javadoc and improved the code format in a …
(edit) @619   14 years Martin Svensson Fixes #101. The plug-in tested both from raw bioassay-listview and …
(edit) @618   14 years Martin Svensson References #101. The import is now done. Code needs to be cleaned up …
(edit) @617   14 years Martin Svensson References #101. Creating RawBioAssays? and split up files. The data …
(edit) @611   14 years Nicklas Nordborg Moving tab2mageimporter branch to the new location
(edit) @610   14 years Nicklas Nordborg Moving affymetrix 0.7 tag to new location
(edit) @609   14 years Nicklas Nordborg Moving affymetrix 0.6 tag to new location
(edit) @607   14 years Nicklas Nordborg Moving batchimporter project to new location
(edit) @606   14 years Nicklas Nordborg Moving tab2mage project to new location
(edit) @605   14 years Nicklas Nordborg Moving se.lu.thep.wenni project to new location
(edit) @604   14 years Nicklas Nordborg Moving se.lu.thep.affymetrix project to new location
(edit) @603   14 years Nicklas Nordborg Moving se.lu.onk project to new location
(edit) @602   14 years Nicklas Nordborg Removed trunk folders that prevents moving the projects
(edit) @601   14 years Nicklas Nordborg Moving Illumina project to new location (second try)
(edit) @600   14 years Nicklas Nordborg Copied to incorrect directory
(edit) @599   14 years Nicklas Nordborg Moving Illumina project to new location
(add) @598   14 years Nicklas Nordborg Preparing new directory structure
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