source: plugins

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Diff Rev Age Author Log Message
(edit) @755   14 years Martin Svensson Fixed weaknesses discovered with FindBugs?-eclipse plug-in
(edit) @754   14 years Martin Svensson References #119 Change to only create a row summary array if it has …
(edit) @753   14 years Martin Svensson The SpotData2Ch objects are now compared by their ratio-value and not …
(edit) @752   14 years Martin Svensson Fixes #119 Create Rank Invariant normalization
(edit) @751   14 years Martin Svensson References #119 Bug-fixing
(edit) @750   14 years Martin Svensson References # 119 The normalization algorithm is almost done. Some …
(edit) @749   14 years Martin Svensson References # 119 Started with the development of this plug-in. No …
(edit) @748   14 years Martin Svensson Fixes #117 Create average nomralization plug-in.
(edit) @747   14 years Martin Svensson References #124 Corrected a few more copy-paste mistake.
(edit) @746   14 years Martin Svensson Fixes #124 Corrected a copy-paste mistake. Also added …
(edit) @745   14 years Martin Svensson References #117 Bug-fixing
(edit) @744   14 years Martin Svensson References #117 Corrected a package name. Also changed the way global …
(edit) @743   14 years Martin Svensson References #117 The normalization is now done. Nothing has been tested …
(edit) @742   14 years Martin Svensson References #117 Cleaned up and refactored the classes. The Avg.norm. …
(edit) @740   14 years Martin Svensson Change name of the package
(edit) @739   14 years Martin Svensson Added new files to the project such as license file, library-files and …
(edit) @738   14 years Martin Svensson Added BASE2WSClient.jar to svn:ignore
(edit) @737   14 years Martin Svensson Fixes #121 BGX-importer should 0-pad Array_Address_ID if the BGX-file …
(edit) @736   14 years Martin Svensson Fixes #112. Changed the property validation when installing a data …
(edit) @735   14 years Martin Svensson Correct the layout
(edit) @734   14 years Martin Svensson Changed the svn-properties so the pages can be viewed in the wiki
(edit) @733   14 years Martin Svensson References #122 Created README and INSTALL pages for the Normalization …
(edit) @732   14 years Martin Svensson References #112 Changed the exception message.
(edit) @731   14 years Martin Svensson Re-arrange in build file for the Normalization plug-in package.
(edit) @730   14 years Martin Svensson References #117 Average normalization plug-in is almost done. The …
(edit) @729   14 years Martin Svensson References #117 Almost done with implementing the normalization …
(edit) @728   14 years Martin Svensson Re-arrange the files. Created the plug-in body for average and cubic …
(edit) @727   14 years Martin Svensson First commit of the normalization package. Contains folder structure, …
(edit) @726   14 years Martin Svensson
(edit) @725   14 years Martin Svensson
(edit) @724   14 years Martin Svensson
(edit) @723   14 years Martin Svensson Added a folder for the normalization package.
(edit) @721   14 years Jari Häkkinen Shuffling directory structure to the recommended trunk and tags.
(edit) @720   14 years Jari Häkkinen Importing CGH Data Dumper
(edit) @718   15 years Jari Häkkinen Also share manifest file.
(edit) @713   15 years Jari Häkkinen Made Smooth to look for parameter section as it is called in the base …
(edit) @712   15 years Jari Häkkinen Smooth requires additional jars to be included in the package. Removed …
(edit) @711   15 years Jari Häkkinen Fixes BASEfile serial spot section issue: The reader did not get …
(edit) @707   15 years Jari Häkkinen Getting Smooth to compile.
(edit) @706   15 years Jari Häkkinen Adding notes on how to create a package.
(edit) @705   15 years Jari Häkkinen Fixing svn property.
(edit) @704   15 years Jari Häkkinen Fixing svn property.
(edit) @703   15 years Jari Häkkinen Preparing for future 1.2 release
(edit) @702   15 years Jari Häkkinen Tagging release 1.1
(edit) @701   15 years Jari Häkkinen Preparing release of Illumina plug-in package 1.1
(edit) @700   15 years Jari Häkkinen Improved description.
(edit) @699   15 years Jari Häkkinen Added two new plugins to the list of plugins. Alphabetized list.
(edit) @698   15 years Jari Häkkinen Fixes #110.
(edit) @689   15 years Jari Häkkinen Addresses #110. Added MAD based outlier removal of negative control …
(edit) @688   15 years Jari Häkkinen Typo
(edit) @686   15 years Jari Häkkinen Addresses #110.
(edit) @685   15 years Jari Häkkinen Improved text.
(edit) @684   15 years Jari Häkkinen Fixes #104. Docs already fixed, added build check.
(edit) @681   15 years Jari Häkkinen Addresses #110. Single sample Whole Genome BeadChips? detection P-value …
(edit) @680   15 years Jari Häkkinen Bumped version number to pre1.1
(edit) @679   15 years Jari Häkkinen Moving flush call to a more appropriate place.
(edit) @678   15 years Jari Häkkinen No configurations for BeadSummaryImporter?
(edit) @677   15 years mbayer tidied up -- minor changes
(edit) @676   15 years mbayer removed deprecated code for raw bioassay creation and replaced with …
(edit) @675   15 years mbayer default values for update existing parameter changed
(edit) @674   15 years mbayer changed the way the zip file input stream is obtained back to how it was
(edit) @673   15 years mbayer updated
(edit) @672   15 years mbayer removed default values for most inputs
(edit) @671   15 years mbayer added code for copying over the two additional required jar files …
(edit) @670   15 years mbayer - build script tidied up - new BASE libs added and existing ones …
(edit) @669   15 years Jari Häkkinen Adding background correction plugin
(edit) @665   15 years Jari Häkkinen Added support for using configurable columns. Useful if BASE extra …
(edit) @664   15 years Jari Häkkinen Fixing problem with reading sections.
(edit) @663   15 years Jari Häkkinen Fixing compiler errors.
(edit) @662   15 years Jari Häkkinen Jar file name and class name wrong.
(edit) @660   15 years Jari Häkkinen Alphabetized list and fixed indendation.
(edit) @659   15 years mbayer fixed two minor errors in build script
(edit) @655   15 years mbayer deleted this jar file -- it does not get updated! need to use …
(edit) @654   15 years mbayer have made a number of changes relating to Affy support and fixed …
(edit) @650   15 years Nicklas Nordborg Preparing for future release 2.X
(edit) @649   15 years Nicklas Nordborg Tagging release 2.6
(edit) @648   15 years Nicklas Nordborg Preparing relase 2.6
(edit) @647   15 years Nicklas Nordborg References #105: Complete the move of the example code from BASE. …
(edit) @646   15 years Jari Häkkinen Fixing copyright lines.
(edit) @645   15 years Jari Häkkinen Updated the BASE core jar requirements.
(edit) @644   15 years mbayer have added a progress bar to the userchoice3.jsp page to warn the user …
(edit) @643   15 years mbayer code base simplified -- no longer supporting autogenerate option and …
(edit) @640   15 years mbayer test file commit -- having trouble committing into the new repo
(edit) @639   15 years mbayer simplified the workflow and inputs
(edit) @634   15 years Nicklas Nordborg Added release procedure instructions.
(edit) @633   15 years Nicklas Nordborg Changes for future release 1.1
(edit) @632   15 years Nicklas Nordborg Tagging release 1.0
(edit) @631   15 years Nicklas Nordborg References #91: Import Illumina Bead Summary(IBS) files as raw data …
(edit) @630   15 years Nicklas Nordborg References #94: Import reporter annotations from bgx files Added …
(edit) @629   15 years Nicklas Nordborg References #89: Installation program and documentation Preparing for …
(edit) @628   15 years Nicklas Nordborg References #89: Installation program and documentation Made the SNP …
(edit) @627   15 years Nicklas Nordborg References #89: Installation program and documentation Added readme …
(edit) @626   15 years Nicklas Nordborg References #89, #100: Added formulas for better SNP gui. Gtype = …
(edit) @625   15 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data Added …
(edit) @624   15 years Nicklas Nordborg References #102: Intensity calculator for Illumina SNP data The main …
(edit) @623   15 years Martin Svensson Fixes #100. Add Illumina SNP platform to the installation program
(edit) @622   15 years Martin Svensson References #101comment:9 - fixes the listed items in the comment.
(edit) @621   15 years Nicklas Nordborg Removed unused imports
(edit) @620   15 years Martin Svensson Fixes #93 Added some more javadoc and improved the code format in a …
(edit) @619   15 years Martin Svensson Fixes #101. The plug-in tested both from raw bioassay-listview and …
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