source: plugins

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Diff Rev Age Author Log Message
(edit) @812   14 years Jari Häkkinen Creating a new package.
(edit) @811   14 years Martin Svensson Fixes #141 Rank invariant should not support configurations. The …
(edit) @810   14 years Nicklas Nordborg Fixes #138: Importing data for multiple raw bioassays in one step
(edit) @809   14 years Nicklas Nordborg Updated release doc so we don't forget version information in …
(edit) @808   14 years Nicklas Nordborg References #110: Illumina detection P-value plug-in Static method in …
(edit) @807   14 years Nicklas Nordborg Fixes #140: Add support in build.xml for automatic download of BASE …
(edit) @806   14 years Jari Häkkinen Setting pre tag to trunk version of MergeBioAssay?.
(edit) @805   14 years Jari Häkkinen Fixes #137. Releasing MergeBioAssay? 2.1
(edit) @804   14 years Jari Häkkinen Addresses #137. Preparing release 2.1 of MergeBioAssay? package.
(edit) @803   14 years Jari Häkkinen Setting pre tag to trunk version of ReplicateError?.
(edit) @802   14 years Jari Häkkinen Fixes #129. Releasing ReplicateError? 1.3
(edit) @801   14 years Jari Häkkinen Addresses #129. Preparing release of ReplicateError? 1.3
(edit) @800   14 years Jari Häkkinen References #129
(edit) @799   14 years Jari Häkkinen Setting pre tag to trunk version of BaseFile?.
(edit) @798   14 years Jari Häkkinen Fixes #131. Releasing BaseFile? 1.0
(edit) @797   14 years Jari Häkkinen Addresses #131. Preparing release BaseFile? 1.0
(edit) @796   14 years Jari Häkkinen References #129. Improved table footnote.
(edit) @795   14 years Jari Häkkinen Fixes #83. Also shifted code lines to align the WA and AA class …
(edit) @794   14 years Jari Häkkinen References #129. Added note about different numbers in table and …
(edit) @793   14 years Jari Häkkinen References #129. No need to generate group information for within …
(edit) @792   14 years Jari Häkkinen Fixes #132. Spot object seems to never get more than one position, but …
(edit) @791   14 years Jari Häkkinen References #129. Removed unused code, moved common code to super …
(edit) @790   14 years Jari Häkkinen Addresses #129. Added proper publication figure references for the algos.
(edit) @789   14 years Jari Häkkinen Changed stray double space characters to single tab characters.
(edit) @788   14 years Jari Häkkinen Addresses #137. Added documentation.
(edit) @787   14 years Jari Häkkinen Forgot one copyright line.
(edit) @786   14 years Jari Häkkinen Addresses #129. Added reference to paper which this plug-in is based on.
(edit) @785   14 years Jari Häkkinen Removed trailing space character.
(edit) @784   14 years Jari Häkkinen Addresses #129. Changing to GPL3.
(edit) @783   14 years Jari Häkkinen Addresses #137. Changing to GPL3.
(edit) @782   14 years Jari Häkkinen Addresses #131. Changing to GPL3.
(edit) @781   14 years Jari Häkkinen Fixing svn properties.
(edit) @780   14 years Jari Häkkinen References #131. Fixing clean up.
(edit) @779   14 years Jari Häkkinen References #137. run should be chmod and fixed class path.
(edit) @778   14 years Jari Häkkinen Fixing svn properties.
(edit) @777   14 years Jari Häkkinen Addresses #137. README replaces doc/INSTALL.txt
(edit) @776   14 years Jari Häkkinen Addresses #137.
(edit) @775   14 years Jari Häkkinen References #131.
(edit) @774   14 years Jari Häkkinen References #129.
(edit) @773   14 years Jari Häkkinen References #129.
(edit) @772   14 years Jari Häkkinen References #129.
(edit) @771   14 years Jari Häkkinen Fixes #136. Version is propagated.
(edit) @770   14 years Jari Häkkinen Addresses #131. Added information on how to create a package.
(edit) @769   14 years Jari Häkkinen Fixes #133. Read comment made to the ticket.
(edit) @768   14 years Jari Häkkinen Fixes #131.
(edit) @767   14 years Jari Häkkinen Addresses #56. Making sure that this tree does not compile.
(edit) @766   14 years Jari Häkkinen Addresses #129. Updated configuration files, reworked html result …
(edit) @765   14 years Jari Häkkinen Addresses #131.
(edit) @764   14 years Jari Häkkinen Addresses #129. Added version info, not distributing source, …
(edit) @763   14 years Jari Häkkinen Moved README.old to lib.
(edit) @762   14 years Jari Häkkinen Moved Concept.ps to lib and added a PDF version of the file.
(edit) @761   14 years Jari Häkkinen Addresses #129. Added license and moved README to README.old
(edit) @760   14 years Jari Häkkinen Fixed spelling.
(edit) @759   14 years Jari Häkkinen Addresses #131. Added version info.
(edit) @758   14 years Jari Häkkinen Addresses #56, #129, #131. Created se.lu.onk.BaseFile? and moved …
(edit) @755   14 years Martin Svensson Fixed weaknesses discovered with FindBugs?-eclipse plug-in
(edit) @754   14 years Martin Svensson References #119 Change to only create a row summary array if it has …
(edit) @753   14 years Martin Svensson The SpotData2Ch objects are now compared by their ratio-value and not …
(edit) @752   14 years Martin Svensson Fixes #119 Create Rank Invariant normalization
(edit) @751   14 years Martin Svensson References #119 Bug-fixing
(edit) @750   14 years Martin Svensson References # 119 The normalization algorithm is almost done. Some …
(edit) @749   14 years Martin Svensson References # 119 Started with the development of this plug-in. No …
(edit) @748   14 years Martin Svensson Fixes #117 Create average nomralization plug-in.
(edit) @747   14 years Martin Svensson References #124 Corrected a few more copy-paste mistake.
(edit) @746   14 years Martin Svensson Fixes #124 Corrected a copy-paste mistake. Also added …
(edit) @745   14 years Martin Svensson References #117 Bug-fixing
(edit) @744   14 years Martin Svensson References #117 Corrected a package name. Also changed the way global …
(edit) @743   14 years Martin Svensson References #117 The normalization is now done. Nothing has been tested …
(edit) @742   14 years Martin Svensson References #117 Cleaned up and refactored the classes. The Avg.norm. …
(edit) @740   14 years Martin Svensson Change name of the package
(edit) @739   14 years Martin Svensson Added new files to the project such as license file, library-files and …
(edit) @738   14 years Martin Svensson Added BASE2WSClient.jar to svn:ignore
(edit) @737   14 years Martin Svensson Fixes #121 BGX-importer should 0-pad Array_Address_ID if the BGX-file …
(edit) @736   14 years Martin Svensson Fixes #112. Changed the property validation when installing a data …
(edit) @735   14 years Martin Svensson Correct the layout
(edit) @734   14 years Martin Svensson Changed the svn-properties so the pages can be viewed in the wiki
(edit) @733   14 years Martin Svensson References #122 Created README and INSTALL pages for the Normalization …
(edit) @732   14 years Martin Svensson References #112 Changed the exception message.
(edit) @731   14 years Martin Svensson Re-arrange in build file for the Normalization plug-in package.
(edit) @730   14 years Martin Svensson References #117 Average normalization plug-in is almost done. The …
(edit) @729   14 years Martin Svensson References #117 Almost done with implementing the normalization …
(edit) @728   14 years Martin Svensson Re-arrange the files. Created the plug-in body for average and cubic …
(edit) @727   14 years Martin Svensson First commit of the normalization package. Contains folder structure, …
(edit) @726   14 years Martin Svensson
(edit) @725   14 years Martin Svensson
(edit) @724   14 years Martin Svensson
(edit) @723   14 years Martin Svensson Added a folder for the normalization package.
(edit) @721   14 years Jari Häkkinen Shuffling directory structure to the recommended trunk and tags.
(edit) @720   14 years Jari Häkkinen Importing CGH Data Dumper
(edit) @718   14 years Jari Häkkinen Also share manifest file.
(edit) @713   14 years Jari Häkkinen Made Smooth to look for parameter section as it is called in the base …
(edit) @712   14 years Jari Häkkinen Smooth requires additional jars to be included in the package. Removed …
(edit) @711   14 years Jari Häkkinen Fixes BASEfile serial spot section issue: The reader did not get …
(edit) @707   14 years Jari Häkkinen Getting Smooth to compile.
(edit) @706   14 years Jari Häkkinen Adding notes on how to create a package.
(edit) @705   14 years Jari Häkkinen Fixing svn property.
(edit) @704   14 years Jari Häkkinen Fixing svn property.
(edit) @703   14 years Jari Häkkinen Preparing for future 1.2 release
(edit) @702   14 years Jari Häkkinen Tagging release 1.1
(edit) @701   14 years Jari Häkkinen Preparing release of Illumina plug-in package 1.1
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