source: plugins

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Diff Rev Age Author Log Message
(edit) @856   14 years Jari Häkkinen Refs #50 and #63. All WeNNI build options now works. make distcheck …
(edit) @855   14 years Jari Häkkinen Removed stray tabs
(edit) @854   14 years Jari Häkkinen Fixes #53
(edit) @853   14 years Jari Häkkinen Fixes #152. Added custom target 'install-plugin' that parallels 'install'.
(edit) @852   14 years Peter Johansson even some more typos - huuh
(edit) @851   14 years Peter Johansson corrected some typos
(edit) @850   14 years Peter Johansson forgot to save this file prior ci r849
(edit) @849   14 years Peter Johansson defining state variable in config.h and when not in base1 mode slice …
(edit) @848   14 years Jari Häkkinen Refs #50. Using proper PluginUtilities? URL for download
(edit) @847   14 years Jari Häkkinen Renamed package to PluginUtilities?.
(edit) @846   14 years Peter Johansson fixed so test can be run outside 'make check'
(edit) @845   14 years Jari Häkkinen Correcting dangerous distclean directive that removed revision …
(edit) @844   14 years Jari Häkkinen Addresses #50, #53. Automatic download of required components. Using …
(edit) @843   14 years Jari Häkkinen Fixed indentation issues and outputting more information to user.
(edit) @842   14 years Jari Häkkinen Typo
(edit) @841   14 years Peter Johansson avoid setting CPPFLAGS and friends in configure.ac and updating …
(edit) @840   14 years Peter Johansson added ACTION-IF-NOT-FOUND in AC_SEARCH_LIBS, in other words, configure …
(edit) @839   14 years Peter Johansson removing warning - use C++ macro not C
(edit) @838   14 years Peter Johansson typo
(edit) @837   14 years Peter Johansson removing annoying Automake warning that %-style pattern rules are a …
(edit) @836   14 years Peter Johansson refs #63. Fixed vpath issues in test so make distcheck no works in …
(edit) @835   14 years Jari Häkkinen Since changeset:834 there is no need to check for sed
(edit) @834   14 years Peter Johansson Triggered by [826]. There were some problems with the Makefile.am, so …
(edit) @833   14 years Nicklas Nordborg Fixes #150: Fix layout of DetectionPValue.java
(edit) @832   14 years Jari Häkkinen Resetting svndigest:ignore property, testing of svndigest stats …
(edit) @831   14 years Jari Häkkinen Removed bindir and cleaned up indentation.
(edit) @830   14 years Jari Häkkinen Deleting svndigest:ignore property to test svndigest stats counting.
(edit) @829   14 years Jari Häkkinen Setting svndigest:ignore on copies of trunks to avoid multiple counting.
(edit) @828   14 years Jari Häkkinen Fixes #54
(edit) @827   14 years Jari Häkkinen Added check for SED and some more changelog entries.
(edit) @826   14 years Jari Häkkinen Fixes #148.
(edit) @825   14 years Jari Häkkinen Fixes #146.
(edit) @824   14 years Jari Häkkinen Fixes #145.
(edit) @823   14 years Jari Häkkinen Addresses #53 and fixes #60.
(edit) @822   14 years Jari Häkkinen Updated change information and default installation paths
(edit) @821   14 years Jari Häkkinen Build of stand-alone and base1 modes work. base2 still to be finalized.
(edit) @820   14 years Jari Häkkinen Added note saying that repository checkout requires ./bootstrap.
(edit) @819   14 years Jari Häkkinen Changed u_int to unsigned int to make code pass compilation on my Mac …
(edit) @818   14 years Jari Häkkinen First commit of the AbstractRunBinaryPlugin? class. Still very …
(edit) @817   14 years Jari Häkkinen Fixing typo.
(edit) @816   14 years Martin Svensson References #143 Removed unnecessary comments.
(edit) @815   14 years Martin Svensson Fixes #143 Illumina plug-in package installer requests wrong permissions
(edit) @814   14 years Nicklas Nordborg References #142. Removed problematic character. For historical reasons …
(edit) @813   14 years Martin Svensson Fixes #142 Illumina installer plugin cannot be installed in some cases
(edit) @812   14 years Jari Häkkinen Creating a new package.
(edit) @811   14 years Martin Svensson Fixes #141 Rank invariant should not support configurations. The …
(edit) @810   14 years Nicklas Nordborg Fixes #138: Importing data for multiple raw bioassays in one step
(edit) @809   14 years Nicklas Nordborg Updated release doc so we don't forget version information in …
(edit) @808   14 years Nicklas Nordborg References #110: Illumina detection P-value plug-in Static method in …
(edit) @807   14 years Nicklas Nordborg Fixes #140: Add support in build.xml for automatic download of BASE …
(edit) @806   14 years Jari Häkkinen Setting pre tag to trunk version of MergeBioAssay?.
(edit) @805   14 years Jari Häkkinen Fixes #137. Releasing MergeBioAssay? 2.1
(edit) @804   14 years Jari Häkkinen Addresses #137. Preparing release 2.1 of MergeBioAssay? package.
(edit) @803   14 years Jari Häkkinen Setting pre tag to trunk version of ReplicateError?.
(edit) @802   14 years Jari Häkkinen Fixes #129. Releasing ReplicateError? 1.3
(edit) @801   14 years Jari Häkkinen Addresses #129. Preparing release of ReplicateError? 1.3
(edit) @800   14 years Jari Häkkinen References #129
(edit) @799   14 years Jari Häkkinen Setting pre tag to trunk version of BaseFile?.
(edit) @798   14 years Jari Häkkinen Fixes #131. Releasing BaseFile? 1.0
(edit) @797   14 years Jari Häkkinen Addresses #131. Preparing release BaseFile? 1.0
(edit) @796   14 years Jari Häkkinen References #129. Improved table footnote.
(edit) @795   14 years Jari Häkkinen Fixes #83. Also shifted code lines to align the WA and AA class …
(edit) @794   14 years Jari Häkkinen References #129. Added note about different numbers in table and …
(edit) @793   14 years Jari Häkkinen References #129. No need to generate group information for within …
(edit) @792   14 years Jari Häkkinen Fixes #132. Spot object seems to never get more than one position, but …
(edit) @791   14 years Jari Häkkinen References #129. Removed unused code, moved common code to super …
(edit) @790   14 years Jari Häkkinen Addresses #129. Added proper publication figure references for the algos.
(edit) @789   14 years Jari Häkkinen Changed stray double space characters to single tab characters.
(edit) @788   14 years Jari Häkkinen Addresses #137. Added documentation.
(edit) @787   14 years Jari Häkkinen Forgot one copyright line.
(edit) @786   14 years Jari Häkkinen Addresses #129. Added reference to paper which this plug-in is based on.
(edit) @785   14 years Jari Häkkinen Removed trailing space character.
(edit) @784   14 years Jari Häkkinen Addresses #129. Changing to GPL3.
(edit) @783   14 years Jari Häkkinen Addresses #137. Changing to GPL3.
(edit) @782   14 years Jari Häkkinen Addresses #131. Changing to GPL3.
(edit) @781   14 years Jari Häkkinen Fixing svn properties.
(edit) @780   14 years Jari Häkkinen References #131. Fixing clean up.
(edit) @779   14 years Jari Häkkinen References #137. run should be chmod and fixed class path.
(edit) @778   14 years Jari Häkkinen Fixing svn properties.
(edit) @777   14 years Jari Häkkinen Addresses #137. README replaces doc/INSTALL.txt
(edit) @776   14 years Jari Häkkinen Addresses #137.
(edit) @775   14 years Jari Häkkinen References #131.
(edit) @774   14 years Jari Häkkinen References #129.
(edit) @773   14 years Jari Häkkinen References #129.
(edit) @772   14 years Jari Häkkinen References #129.
(edit) @771   14 years Jari Häkkinen Fixes #136. Version is propagated.
(edit) @770   14 years Jari Häkkinen Addresses #131. Added information on how to create a package.
(edit) @769   14 years Jari Häkkinen Fixes #133. Read comment made to the ticket.
(edit) @768   14 years Jari Häkkinen Fixes #131.
(edit) @767   14 years Jari Häkkinen Addresses #56. Making sure that this tree does not compile.
(edit) @766   14 years Jari Häkkinen Addresses #129. Updated configuration files, reworked html result …
(edit) @765   14 years Jari Häkkinen Addresses #131.
(edit) @764   14 years Jari Häkkinen Addresses #129. Added version info, not distributing source, …
(edit) @763   14 years Jari Häkkinen Moved README.old to lib.
(edit) @762   14 years Jari Häkkinen Moved Concept.ps to lib and added a PDF version of the file.
(edit) @761   14 years Jari Häkkinen Addresses #129. Added license and moved README to README.old
(edit) @760   14 years Jari Häkkinen Fixed spelling.
(edit) @759   14 years Jari Häkkinen Addresses #131. Added version info.
(edit) @758   14 years Jari Häkkinen Addresses #56, #129, #131. Created se.lu.onk.BaseFile? and moved …
(edit) @755   14 years Martin Svensson Fixed weaknesses discovered with FindBugs?-eclipse plug-in
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