source: plugins

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Diff Rev Age Author Log Message
(edit) @887   14 years Jari Häkkinen Fixes #154. configure now supports setting of java source files encoding.
(edit) @886   14 years Peter Johansson typo that fixes #63. 'make mainatianer-check' now works here.
(edit) @885   14 years Jari Häkkinen Use rather that '.' in classpath.
(edit) @884   14 years Jari Häkkinen Cleaning up JAVACCLASSPATH usage.
(edit) @883   14 years Jari Häkkinen Fixes #157. Bumping version number to 2.2pre
(edit) @882   14 years Jari Häkkinen Tagging version 2.1 of se.lu.onk.Center
(edit) @881   14 years Jari Häkkinen Addresses #157. Preparing release 2.1 of Center.
(edit) @880   14 years Jari Häkkinen Addresses #157.
(edit) @879   14 years Jari Häkkinen Changed documentation to document the Center plug-in
(edit) @878   14 years Jari Häkkinen Spell checked.
(edit) @877   14 years Jari Häkkinen Spell checked.
(edit) @876   14 years Jari Häkkinen Correcting typo.
(edit) @875   14 years Jari Häkkinen Addresses #157 and #56. Creating se.lu.onk.Center.
(edit) @874   14 years Peter Johansson refs #71 Adding some targets for maintainer to check that everything …
(edit) @873   14 years Nicklas Nordborg Fixes #151: Use two queries instead of one in DetectionPValue.run() method
(edit) @872   14 years Peter Johansson TODO is included in dist by default, so no need to add it explicitly
(edit) @871   14 years Peter Johansson install-exec-local didn't respect DESTDIR. Copying code generated by …
(edit) @870   14 years Peter Johansson calling tar through script 'missing'. refs #153.
(edit) @869   14 years Peter Johansson Adding uninstall-plugin target Using install target for install-plugin …
(edit) @868   14 years Jari Häkkinen JAVACFLAGS was a classpath! Correcting and introduced a proper …
(edit) @867   14 years Jari Häkkinen Typo
(edit) @866   14 years Peter Johansson simplify syntax of install-plugin targets by using install target
(edit) @865   14 years Peter Johansson adding uninstall targets in base2. Should probably be added in other …
(edit) @864   14 years Peter Johansson refs #153 - using autoreconf in bootstrap. Did not add '--force' …
(edit) @863   14 years Jari Häkkinen Addresses #50. Working on the Java wrapper.
(edit) @862   14 years Jari Häkkinen Cleanup of the abstract super class. More to come …
(edit) @861   14 years Jari Häkkinen Using BASE 2.9 API
(edit) @860   14 years Peter Johansson adding tests for javac and jar - refs #153
(edit) @859   14 years Peter Johansson adding tests for javac and jar - refs #153
(edit) @858   14 years Jari Häkkinen Addresses #50. Working with BASE-plugin communication issues and …
(edit) @857   14 years Jari Häkkinen Refs #50. AM_CONDITIONALs must be available for all build states.
(edit) @856   14 years Jari Häkkinen Refs #50 and #63. All WeNNI build options now works. make distcheck …
(edit) @855   14 years Jari Häkkinen Removed stray tabs
(edit) @854   14 years Jari Häkkinen Fixes #53
(edit) @853   14 years Jari Häkkinen Fixes #152. Added custom target 'install-plugin' that parallels 'install'.
(edit) @852   14 years Peter Johansson even some more typos - huuh
(edit) @851   14 years Peter Johansson corrected some typos
(edit) @850   14 years Peter Johansson forgot to save this file prior ci r849
(edit) @849   14 years Peter Johansson defining state variable in config.h and when not in base1 mode slice …
(edit) @848   14 years Jari Häkkinen Refs #50. Using proper PluginUtilities? URL for download
(edit) @847   14 years Jari Häkkinen Renamed package to PluginUtilities?.
(edit) @846   14 years Peter Johansson fixed so test can be run outside 'make check'
(edit) @845   14 years Jari Häkkinen Correcting dangerous distclean directive that removed revision …
(edit) @844   14 years Jari Häkkinen Addresses #50, #53. Automatic download of required components. Using …
(edit) @843   14 years Jari Häkkinen Fixed indentation issues and outputting more information to user.
(edit) @842   14 years Jari Häkkinen Typo
(edit) @841   14 years Peter Johansson avoid setting CPPFLAGS and friends in configure.ac and updating …
(edit) @840   14 years Peter Johansson added ACTION-IF-NOT-FOUND in AC_SEARCH_LIBS, in other words, configure …
(edit) @839   14 years Peter Johansson removing warning - use C++ macro not C
(edit) @838   14 years Peter Johansson typo
(edit) @837   14 years Peter Johansson removing annoying Automake warning that %-style pattern rules are a …
(edit) @836   14 years Peter Johansson refs #63. Fixed vpath issues in test so make distcheck no works in …
(edit) @835   14 years Jari Häkkinen Since changeset:834 there is no need to check for sed
(edit) @834   14 years Peter Johansson Triggered by [826]. There were some problems with the Makefile.am, so …
(edit) @833   14 years Nicklas Nordborg Fixes #150: Fix layout of DetectionPValue.java
(edit) @832   14 years Jari Häkkinen Resetting svndigest:ignore property, testing of svndigest stats …
(edit) @831   14 years Jari Häkkinen Removed bindir and cleaned up indentation.
(edit) @830   14 years Jari Häkkinen Deleting svndigest:ignore property to test svndigest stats counting.
(edit) @829   14 years Jari Häkkinen Setting svndigest:ignore on copies of trunks to avoid multiple counting.
(edit) @828   14 years Jari Häkkinen Fixes #54
(edit) @827   14 years Jari Häkkinen Added check for SED and some more changelog entries.
(edit) @826   14 years Jari Häkkinen Fixes #148.
(edit) @825   14 years Jari Häkkinen Fixes #146.
(edit) @824   14 years Jari Häkkinen Fixes #145.
(edit) @823   14 years Jari Häkkinen Addresses #53 and fixes #60.
(edit) @822   14 years Jari Häkkinen Updated change information and default installation paths
(edit) @821   14 years Jari Häkkinen Build of stand-alone and base1 modes work. base2 still to be finalized.
(edit) @820   14 years Jari Häkkinen Added note saying that repository checkout requires ./bootstrap.
(edit) @819   14 years Jari Häkkinen Changed u_int to unsigned int to make code pass compilation on my Mac …
(edit) @818   14 years Jari Häkkinen First commit of the AbstractRunBinaryPlugin? class. Still very …
(edit) @817   14 years Jari Häkkinen Fixing typo.
(edit) @816   14 years Martin Svensson References #143 Removed unnecessary comments.
(edit) @815   14 years Martin Svensson Fixes #143 Illumina plug-in package installer requests wrong permissions
(edit) @814   14 years Nicklas Nordborg References #142. Removed problematic character. For historical reasons …
(edit) @813   14 years Martin Svensson Fixes #142 Illumina installer plugin cannot be installed in some cases
(edit) @812   14 years Jari Häkkinen Creating a new package.
(edit) @811   14 years Martin Svensson Fixes #141 Rank invariant should not support configurations. The …
(edit) @810   14 years Nicklas Nordborg Fixes #138: Importing data for multiple raw bioassays in one step
(edit) @809   14 years Nicklas Nordborg Updated release doc so we don't forget version information in …
(edit) @808   14 years Nicklas Nordborg References #110: Illumina detection P-value plug-in Static method in …
(edit) @807   14 years Nicklas Nordborg Fixes #140: Add support in build.xml for automatic download of BASE …
(edit) @806   14 years Jari Häkkinen Setting pre tag to trunk version of MergeBioAssay?.
(edit) @805   14 years Jari Häkkinen Fixes #137. Releasing MergeBioAssay? 2.1
(edit) @804   14 years Jari Häkkinen Addresses #137. Preparing release 2.1 of MergeBioAssay? package.
(edit) @803   14 years Jari Häkkinen Setting pre tag to trunk version of ReplicateError?.
(edit) @802   14 years Jari Häkkinen Fixes #129. Releasing ReplicateError? 1.3
(edit) @801   14 years Jari Häkkinen Addresses #129. Preparing release of ReplicateError? 1.3
(edit) @800   14 years Jari Häkkinen References #129
(edit) @799   14 years Jari Häkkinen Setting pre tag to trunk version of BaseFile?.
(edit) @798   14 years Jari Häkkinen Fixes #131. Releasing BaseFile? 1.0
(edit) @797   14 years Jari Häkkinen Addresses #131. Preparing release BaseFile? 1.0
(edit) @796   14 years Jari Häkkinen References #129. Improved table footnote.
(edit) @795   14 years Jari Häkkinen Fixes #83. Also shifted code lines to align the WA and AA class …
(edit) @794   14 years Jari Häkkinen References #129. Added note about different numbers in table and …
(edit) @793   14 years Jari Häkkinen References #129. No need to generate group information for within …
(edit) @792   14 years Jari Häkkinen Fixes #132. Spot object seems to never get more than one position, but …
(edit) @791   14 years Jari Häkkinen References #129. Removed unused code, moved common code to super …
(edit) @790   14 years Jari Häkkinen Addresses #129. Added proper publication figure references for the algos.
(edit) @789   14 years Jari Häkkinen Changed stray double space characters to single tab characters.
(edit) @788   14 years Jari Häkkinen Addresses #137. Added documentation.
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