source: plugins

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Diff Rev Age Author Log Message
(edit) @975   14 years Martin Svensson References #119 Some changes in the calculation-part. The plug-in runs …
(edit) @973   14 years Jari Häkkinen Addresses #118. Required yat version is 0.5 or later
(edit) @972   14 years Jari Häkkinen Addresses #118. Load of java wrapper works but manual install of …
(edit) @971   14 years Martin Svensson Added library-files to the ignore-list
(edit) @970   14 years Martin Svensson Preparing for future release Illumina package v1.4
(edit) @969   14 years Martin Svensson Tagging release 1.3
(edit) @968   14 years Martin Svensson Preparing release 1.3
(edit) @967   14 years Martin Svensson References #119 The plug-in is mostly ready for testing
(edit) @966   14 years Martin Svensson References #119 Part of the normalization algorithm is implemented
(edit) @965   14 years Jari Häkkinen Corrected flags summary output
(edit) @964   14 years Jari Häkkinen Added support to add qQN source to the normalizer package.
(edit) @963   14 years Jari Häkkinen Improved configure.ac and added option to disable check on required libs.
(edit) @962   14 years Jari Häkkinen Added missing include statement.
(edit) @961   14 years Jari Häkkinen Refs #118 and #161. PluginUtilities? download support. Added distclean …
(edit) @960   14 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @959   14 years Martin Svensson Fixes #164 Improve documentation on how to upgrade the illumina …
(edit) @958   14 years Martin Svensson Fixes #177 Add information about how to upgrade the normalization package.
(edit) @957   14 years Nicklas Nordborg Fixes #175: Update the ant script to include contrib directory when …
(edit) @956   14 years Jari Häkkinen Removed stray character in configure.ac
(edit) @955   14 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @954   14 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @953   14 years Jari Häkkinen Refs #118. Changes suggested by the yat developer team.
(edit) @952   14 years Jari Häkkinen Addresses #118. Added underlying C++ binary for the qQuantile.
(edit) @951   14 years Martin Svensson References #119 Added plugin-class. The plugin doesn't really do …
(edit) @950   14 years Martin Svensson References #119 Moved some method from the QuantileNormalization? …
(edit) @949   14 years Martin Svensson Fixes #176 Create release document
(edit) @948   14 years Martin Svensson Fixes #168 MD5 sum should be automatically generated for a package
(edit) @947   14 years Martin Svensson Fixes #166 (net.sf.basedb.normalizers) Automatic progression of …
(edit) @946   14 years Martin Svensson References #161 Set external jar-files to be ignored
(edit) @945   14 years Martin Svensson Fixes #161 (net.sf.basedb.normalizers) Automatic download of BASE API
(edit) @944   14 years Martin Svensson References #173 The 'float to integer' conversion has been removed but …
(edit) @943   14 years Martin Svensson Fixes #171 IBS raw data importer should be able to handle floats in …
(edit) @942   14 years Martin Svensson Fixes #170 Result dialouge after batch importing several raw bioassays …
(edit) @941   14 years Martin Svensson References #174 license text should referr to the Illumina plug-in package
(edit) @940   14 years Martin Svensson Fixes #174 Change license to GPL 3 for the illumina package
(edit) @938   14 years Jari Häkkinen Added svn property.
(edit) @937   14 years Jari Häkkinen Added beadstudio data to IBS data converter.
(edit) @936   14 years Peter Johansson add --force option in autoreconf call in bootstrap. The reason this is …
(edit) @935   14 years Jari Häkkinen Removing braches.
(edit) @934   14 years Jari Häkkinen Tagging version 1.0 of the net.sf.basedb.normalizers.
(edit) @933   14 years Jari Häkkinen Corrected spelling
(edit) @932   14 years Jari Häkkinen Addresses #120.
(edit) @931   14 years Jari Häkkinen Addresses #120. Preparing 1.0 release.
(edit) @930   14 years Jari Häkkinen Typo
(edit) @929   14 years Jari Häkkinen Removing CubicSplineNormalization? stub.
(edit) @928   14 years Jari Häkkinen Fixes #167. Now using geometric mean
(edit) @927   14 years Jari Häkkinen Refs #165.
(edit) @926   14 years Jari Häkkinen Fixes #165. Simply renamed rank invariant to quantile and made …
(edit) @925   14 years Jari Häkkinen Improved README.
(edit) @924   14 years Jari Häkkinen
(edit) @923   14 years Martin Svensson References #163 Disregard the last commit. This will do instead.
(edit) @922   14 years Martin Svensson References #163 The sorting of spotdata should be stable now. Please …
(edit) @918   14 years Jari Häkkinen Removed stray lines.
(edit) @914   14 years Nicklas Nordborg Adding note about checking that the information on the download page …
(edit) @913   14 years Nicklas Nordborg Preparing for future release 1.3
(edit) @912   14 years Nicklas Nordborg Tagging Illumina package 1.2
(edit) @911   14 years Nicklas Nordborg Preparing release of Illumina package 1.2
(edit) @910   14 years Jari Häkkinen Changing normalizer package license to GPL3.
(edit) @909   14 years Jari Häkkinen Addresses #120.
(edit) @908   14 years Jari Häkkinen Addresses #50. Running nni with phony weights.
(edit) @907   14 years Peter Johansson using ACLOCAL_AMFLAGS requires Automake 1.10
(edit) @906   14 years Jari Häkkinen Some external binary will output result to stdout ... optionally …
(edit) @905   14 years Peter Johansson WeNNI.java should be included in dist
(edit) @904   14 years Peter Johansson installing jars with chmod 644
(edit) @903   14 years Peter Johansson Style is everything
(edit) @902   14 years Peter Johansson timestamp of downloaded jar file will be old. Fixing deps to reflect …
(edit) @901   14 years Peter Johansson improve dependency
(edit) @900   14 years Jari Häkkinen Refs #159
(edit) @899   14 years Jari Häkkinen Address #159. Renaming BASE1 plugin definition and minor changes to …
(edit) @898   14 years Jari Häkkinen Adding URL.
(edit) @897   14 years Jari Häkkinen Correcting URL
(edit) @896   14 years Jari Häkkinen Refs #56. Removing branches and tags directories since they will never …
(edit) @895   14 years Jari Häkkinen Addresses #56 and #159. Creating VirtualArray? module.
(edit) @894   14 years Jari Häkkinen Adding missing svn property.
(edit) @893   14 years Jari Häkkinen Addresses #50. Adapting to PluginUtilities? interface changes.
(edit) @892   14 years Jari Häkkinen Improved dependency checking on pluginutilities.
(edit) @891   14 years Jari Häkkinen Changed interface and added debug code.
(edit) @890   14 years Jari Häkkinen Added debug code.
(edit) @889   14 years Peter Johansson experienced some problems when changing from normal build to VPATH …
(edit) @888   14 years Peter Johansson fixing some make dependency
(edit) @887   14 years Jari Häkkinen Fixes #154. configure now supports setting of java source files encoding.
(edit) @886   14 years Peter Johansson typo that fixes #63. 'make mainatianer-check' now works here.
(edit) @885   14 years Jari Häkkinen Use rather that '.' in classpath.
(edit) @884   14 years Jari Häkkinen Cleaning up JAVACCLASSPATH usage.
(edit) @883   14 years Jari Häkkinen Fixes #157. Bumping version number to 2.2pre
(edit) @882   14 years Jari Häkkinen Tagging version 2.1 of se.lu.onk.Center
(edit) @881   14 years Jari Häkkinen Addresses #157. Preparing release 2.1 of Center.
(edit) @880   14 years Jari Häkkinen Addresses #157.
(edit) @879   14 years Jari Häkkinen Changed documentation to document the Center plug-in
(edit) @878   14 years Jari Häkkinen Spell checked.
(edit) @877   14 years Jari Häkkinen Spell checked.
(edit) @876   14 years Jari Häkkinen Correcting typo.
(edit) @875   14 years Jari Häkkinen Addresses #157 and #56. Creating se.lu.onk.Center.
(edit) @874   14 years Peter Johansson refs #71 Adding some targets for maintainer to check that everything …
(edit) @873   14 years Nicklas Nordborg Fixes #151: Use two queries instead of one in DetectionPValue.run() method
(edit) @872   14 years Peter Johansson TODO is included in dist by default, so no need to add it explicitly
(edit) @871   14 years Peter Johansson install-exec-local didn't respect DESTDIR. Copying code generated by …
(edit) @870   14 years Peter Johansson calling tar through script 'missing'. refs #153.
(edit) @869   14 years Peter Johansson Adding uninstall-plugin target Using install target for install-plugin …
(edit) @868   14 years Jari Häkkinen JAVACFLAGS was a classpath! Correcting and introduced a proper …
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