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@336
|
16 years |
Peter Johansson |
adding javacflags in configure
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|
@335
|
16 years |
Peter Johansson |
slimming down files refs #50
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@334
|
16 years |
Peter Johansson |
first compilable version refs #50
|
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@333
|
16 years |
Peter Johansson |
improved Makefile.am refs #50
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@332
|
16 years |
Peter Johansson |
class is BASE2 specific and should be in that directory
|
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@331
|
16 years |
Peter Johansson |
initial commit for abstract plugin support class for running external …
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@330
|
16 years |
Peter Johansson |
clean removes entire .build file structure
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@329
|
16 years |
Peter Johansson |
overriding autotools variable bindir, so bins are installed in …
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@328
|
16 years |
Peter Johansson |
cleaning up and adding --with-gsl option fixes #59
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@327
|
16 years |
Peter Johansson |
refs #58 variable INSTALLDIR is set in configure and propagated out to …
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@326
|
16 years |
Peter Johansson |
fixes #325 make check works
|
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@325
|
16 years |
Peter Johansson |
refs #62 make check now works in base1 mode
|
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@324
|
16 years |
Peter Johansson |
fixes #57. --enable-base=X where X is either base1 base2 or stand-alone.
|
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|
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@323
|
16 years |
Peter Johansson |
minor fixes
|
|
|
|
@322
|
16 years |
Peter Johansson |
fixed typo
|
|
|
|
@321
|
16 years |
Peter Johansson |
improved flags to local c++_tools
|
|
|
|
@320
|
16 years |
Peter Johansson |
fixes #51. configure option state {base1, base2, stand-alone} where …
|
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|
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@319
|
16 years |
Peter Johansson |
empty WeNNI.java and some minor changes in configure.ac stolen from yat
|
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|
@318
|
16 years |
Peter Johansson |
adding Makefile.am for base2 dir
|
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|
|
@317
|
16 years |
Peter Johansson |
wikized README et al and corrected configure.ac
|
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|
|
@316
|
16 years |
Peter Johansson |
replaced todo items with a reference to todo list in wiki
|
|
|
|
@315
|
16 years |
Peter Johansson |
changed structure again. NNIFileConverter is moved to bin, which means …
|
|
|
|
@314
|
16 years |
Peter Johansson |
updating copyrights in modified files and added some Makefile.am
|
|
|
|
@313
|
16 years |
Peter Johansson |
new file structure for BASE2
|
|
|
|
@312
|
16 years |
Peter Johansson |
removed imports not needed and added dependency in Makefile. Inherited …
|
|
|
|
@311
|
16 years |
Peter Johansson |
creating a base class for plier and rma
|
|
|
|
@310
|
16 years |
Peter Johansson |
oops now we can compile again. sorry about that
|
|
|
|
@309
|
16 years |
Peter Johansson |
changed name of the package in copyrights. It is no longer RMAExpress
|
|
|
|
@308
|
16 years |
Peter Johansson |
bumping version number
|
|
|
|
@305
|
16 years |
Jari Häkkinen |
Added fixed items to list.
|
|
|
|
@304
|
16 years |
Jari Häkkinen |
Bumped version number.
|
|
|
|
@303
|
16 years |
Jari Häkkinen |
Improved speed.
|
|
|
|
@302
|
16 years |
Peter Johansson |
changed to log2 base
|
|
|
|
@301
|
16 years |
Jari Häkkinen |
Added clarification on result scale.
|
|
|
|
@300
|
16 years |
Peter Johansson |
Result from plier is now logarithmized prior imported to BASE
|
|
|
|
@299
|
16 years |
Jari Häkkinen |
Wiki page changed.
|
|
|
|
@298
|
16 years |
Jari Häkkinen |
Fixing broken sed substitution.
|
|
|
|
@297
|
16 years |
Jari Häkkinen |
Fixing copyright year.
|
|
|
|
@296
|
16 years |
Peter Johansson |
removing debug ''
|
|
|
|
@295
|
16 years |
Jari Häkkinen |
Added Plier class name to instructions.
|
|
|
|
@294
|
16 years |
Peter Johansson |
typo
|
|
|
|
@293
|
16 years |
Peter Johansson |
improved text on PLIER
|
|
|
|
@292
|
16 years |
Jari Häkkinen |
Fixing precompiled dependency.
|
|
|
|
@291
|
16 years |
Jari Häkkinen |
Fixes #21.
|
|
|
|
@290
|
16 years |
Jari Häkkinen |
Got rid of deprecation warning.
|
|
|
|
@289
|
16 years |
Peter Johansson |
improved dependencies
|
|
|
|
@288
|
16 years |
Peter Johansson |
typo
|
|
|
|
@287
|
16 years |
Jari Häkkinen |
Removed explicit version number.
|
|
|
|
@286
|
16 years |
Jari Häkkinen |
Fixes #42.
|
|
|
|
@285
|
16 years |
Jari Häkkinen |
Addresses #42.
|
|
|
|
@284
|
16 years |
Jari Häkkinen |
Spell checked.
|
|
|
|
@283
|
16 years |
Jari Häkkinen |
Removed stray \!
|
|
|
|
@282
|
16 years |
Jari Häkkinen |
Improved text.
|
|
|
|
@281
|
16 years |
Jari Häkkinen |
Updated confusing numbering.
|
|
|
|
@280
|
16 years |
Jari Häkkinen |
Removed my email address. Updated RMAExpress information to release …
|
|
|
|
@279
|
16 years |
Jari Häkkinen |
Removed my email address, and updated link to new demo server location.
|
|
|
|
@278
|
16 years |
Peter Johansson |
fixing a few typos
|
|
|
|
@277
|
16 years |
Peter Johansson |
some lippstick refs #45
|
|
|
|
@276
|
16 years |
Peter Johansson |
updated README for affy package refs #45
|
|
|
|
@275
|
16 years |
Peter Johansson |
adding property mime-type text/x-trac-wiki
|
|
|
|
@274
|
16 years |
Peter Johansson |
some more lippstick refs #45
|
|
|
|
@273
|
16 years |
Peter Johansson |
some more installation instructions for affymetrix package refs #45
|
|
|
|
@272
|
16 years |
Peter Johansson |
intermediate commit of new installation instructions for affymetrix …
|
|
|
|
@271
|
16 years |
Peter Johansson |
Fixing the import into BASE of the results generated by PLIER.
Refs …
|
|
|
|
@270
|
16 years |
Johan Enell |
corrected an error message
|
|
|
|
@269
|
16 years |
Johan Enell |
made findFieldIntList a little bir more stable
|
|
|
|
@268
|
16 years |
Peter Johansson |
removed deprecated options in svndigest config file. Also sorted …
|
|
|
|
@267
|
16 years |
Jari Häkkinen |
Added config file for svndigest.
|
|
|
|
@266
|
16 years |
Peter Johansson |
initial check-in of PLIER refs #45
|
|
|
|
@265
|
16 years |
Johan Enell |
the sections sets default value at construction
|
|
|
|
@264
|
16 years |
Johan Enell |
made the exception msg a little better
|
|
|
|
@263
|
16 years |
Johan Enell |
Added methods to get sections of a specific type
|
|
|
|
@262
|
16 years |
Johan Enell |
Fixed a nullpointer
|
|
|
|
@261
|
16 years |
Jari Häkkinen |
Changed samples and code to refer to the demo server.
|
|
|
|
@260
|
16 years |
Jari Häkkinen |
Fixed svn properties, 2nd try.
|
|
|
|
@259
|
16 years |
Jari Häkkinen |
Fixed svn properties. Added $ string.
|
|
|
|
@258
|
16 years |
Jari Häkkinen |
Changed default server to the demo server, default user to base2.
|
|
|
|
@257
|
16 years |
mattias |
Initial import of webservice modules in Perl and R
|
|
|
|
@256
|
16 years |
Jari Häkkinen |
Adding directory for web services clients from thep.
|
|
|
|
@255
|
16 years |
Johan Enell |
made some changes in the printing methods
|
|
|
|
@254
|
16 years |
Johan Enell |
prints the spot data
|
|
|
|
@253
|
16 years |
Johan Enell |
BASEFile prints spot data
|
|
|
|
@252
|
16 years |
Johan Enell |
Calculates RankProduct? and creates output
|
|
|
|
@251
|
16 years |
Johan Enell |
changed getCount
|
|
|
|
@250
|
16 years |
Johan Enell |
there were some buggs …
|
|
|
|
@249
|
16 years |
Johan Enell |
removed some warnings
|
|
|
|
@248
|
16 years |
Johan Enell |
major changes to basefile
some methods are deprecated and will be removed
|
|
|
|
@247
|
16 years |
Johan Enell |
Added BASEFileAssaySection
|
|
|
|
@246
|
16 years |
Johan Enell |
RankProduct? calculates the rp correct
|
|
|
|
@245
|
16 years |
Johan Enell |
added a new method in BASEFileException and caught an exception in the …
|
|
|
|
@244
|
16 years |
Johan Enell |
RankProduct? now working
|
|
|
|
@243
|
16 years |
Johan Enell |
renamed plot
|
|
|
|
@242
|
16 years |
Johan Enell |
plot classes added
|
|
|
|
@241
|
16 years |
Johan Enell |
added ztest to onclass package
|
|
|
|
@240
|
16 years |
Johan Enell |
OneClass? added with ztest
|
|
|
|
@239
|
16 years |
mbayer |
several bug fixes:
- change handling of dirs and files so that file is …
|
|
|
|
@238
|
16 years |
mbayer |
updated
|
|
|
|
@237
|
16 years |
mbayer |
Removed file/folder
|
|
|
|
@236
|
16 years |
mbayer |
first added
|
|
|
|
@235
|
16 years |
mbayer |
updated
|
|
|
|
