source: trunk

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Diff Rev Age Author Log Message
(edit) @348   15 years Jari Häkkinen Preparing 0.7 release of se.lu.thep.affymetrix, update copyrights.
(edit) @347   15 years Jari Häkkinen Preparing 0.7 release of se.lu.thep.affymetrix
(edit) @346   15 years Jari Häkkinen Preparing 0.7 release of se.lu.thep.affymetrix
(edit) @345   15 years Jari Häkkinen Fixes #67 and #68. Added information on how to install in Microsoft …
(edit) @344   15 years Jari Häkkinen Adding entries to ChangeLog?.
(edit) @343   15 years Jari Häkkinen Fixes #69. DBControl usage is improved.
(edit) @342   15 years Jari Häkkinen Fixed spelling errors.
(edit) @341   15 years Peter Johansson update copyright
(edit) @340   15 years Peter Johansson fixes #65 version number in plugin_WeNNI.base is generated …
(edit) @339   15 years Jari Häkkinen Added comment (recommendation) on using presence filter in BASE 1.
(edit) @338   15 years Peter Johansson using ac macro fully rather than bashing
(edit) @336   15 years Peter Johansson adding javacflags in configure
(edit) @335   15 years Peter Johansson slimming down files refs #50
(edit) @334   15 years Peter Johansson first compilable version refs #50
(edit) @333   15 years Peter Johansson improved Makefile.am refs #50
(edit) @332   15 years Peter Johansson class is BASE2 specific and should be in that directory
(edit) @331   15 years Peter Johansson initial commit for abstract plugin support class for running external …
(edit) @330   15 years Peter Johansson clean removes entire .build file structure
(edit) @329   15 years Peter Johansson overriding autotools variable bindir, so bins are installed in …
(edit) @328   15 years Peter Johansson cleaning up and adding --with-gsl option fixes #59
(edit) @327   15 years Peter Johansson refs #58 variable INSTALLDIR is set in configure and propagated out to …
(edit) @326   16 years Peter Johansson fixes #325 make check works
(edit) @325   16 years Peter Johansson refs #62 make check now works in base1 mode
(edit) @324   16 years Peter Johansson fixes #57. --enable-base=X where X is either base1 base2 or stand-alone.
(edit) @323   16 years Peter Johansson minor fixes
(edit) @322   16 years Peter Johansson fixed typo
(edit) @321   16 years Peter Johansson improved flags to local c++_tools
(edit) @320   16 years Peter Johansson fixes #51. configure option state {base1, base2, stand-alone} where …
(edit) @319   16 years Peter Johansson empty WeNNI.java and some minor changes in configure.ac stolen from yat
(edit) @318   16 years Peter Johansson adding Makefile.am for base2 dir
(edit) @317   16 years Peter Johansson wikized README et al and corrected configure.ac
(edit) @316   16 years Peter Johansson replaced todo items with a reference to todo list in wiki
(edit) @315   16 years Peter Johansson changed structure again. NNIFileConverter is moved to bin, which means …
(edit) @314   16 years Peter Johansson updating copyrights in modified files and added some Makefile.am
(edit) @313   16 years Peter Johansson new file structure for BASE2
(edit) @312   16 years Peter Johansson removed imports not needed and added dependency in Makefile. Inherited …
(edit) @311   16 years Peter Johansson creating a base class for plier and rma
(edit) @310   16 years Peter Johansson oops now we can compile again. sorry about that
(edit) @309   16 years Peter Johansson changed name of the package in copyrights. It is no longer RMAExpress
(edit) @308   16 years Peter Johansson bumping version number
(edit) @305   16 years Jari Häkkinen Added fixed items to list.
(edit) @304   16 years Jari Häkkinen Bumped version number.
(edit) @303   16 years Jari Häkkinen Improved speed.
(edit) @302   16 years Peter Johansson changed to log2 base
(edit) @301   16 years Jari Häkkinen Added clarification on result scale.
(edit) @300   16 years Peter Johansson Result from plier is now logarithmized prior imported to BASE
(edit) @299   16 years Jari Häkkinen Wiki page changed.
(edit) @298   16 years Jari Häkkinen Fixing broken sed substitution.
(edit) @297   16 years Jari Häkkinen Fixing copyright year.
(edit) @296   16 years Peter Johansson removing debug ''
(edit) @295   16 years Jari Häkkinen Added Plier class name to instructions.
(edit) @294   16 years Peter Johansson typo
(edit) @293   16 years Peter Johansson improved text on PLIER
(edit) @292   16 years Jari Häkkinen Fixing precompiled dependency.
(edit) @291   16 years Jari Häkkinen Fixes #21.
(edit) @290   16 years Jari Häkkinen Got rid of deprecation warning.
(edit) @289   16 years Peter Johansson improved dependencies
(edit) @288   16 years Peter Johansson typo
(edit) @287   16 years Jari Häkkinen Removed explicit version number.
(edit) @286   16 years Jari Häkkinen Fixes #42.
(edit) @285   16 years Jari Häkkinen Addresses #42.
(edit) @284   16 years Jari Häkkinen Spell checked.
(edit) @283   16 years Jari Häkkinen Removed stray \!
(edit) @282   16 years Jari Häkkinen Improved text.
(edit) @281   16 years Jari Häkkinen Updated confusing numbering.
(edit) @280   16 years Jari Häkkinen Removed my email address. Updated RMAExpress information to release …
(edit) @279   16 years Jari Häkkinen Removed my email address, and updated link to new demo server location.
(edit) @278   16 years Peter Johansson fixing a few typos
(edit) @277   16 years Peter Johansson some lippstick refs #45
(edit) @276   16 years Peter Johansson updated README for affy package refs #45
(edit) @275   16 years Peter Johansson adding property mime-type text/x-trac-wiki
(edit) @274   16 years Peter Johansson some more lippstick refs #45
(edit) @273   16 years Peter Johansson some more installation instructions for affymetrix package refs #45
(edit) @272   16 years Peter Johansson intermediate commit of new installation instructions for affymetrix …
(edit) @271   16 years Peter Johansson Fixing the import into BASE of the results generated by PLIER. Refs …
(edit) @270   16 years Johan Enell corrected an error message
(edit) @269   16 years Johan Enell made findFieldIntList a little bir more stable
(edit) @268   16 years Peter Johansson removed deprecated options in svndigest config file. Also sorted …
(edit) @267   16 years Jari Häkkinen Added config file for svndigest.
(edit) @266   16 years Peter Johansson initial check-in of PLIER refs #45
(edit) @265   16 years Johan Enell the sections sets default value at construction
(edit) @264   16 years Johan Enell made the exception msg a little better
(edit) @263   16 years Johan Enell Added methods to get sections of a specific type
(edit) @262   16 years Johan Enell Fixed a nullpointer
(edit) @261   16 years Jari Häkkinen Changed samples and code to refer to the demo server.
(edit) @260   16 years Jari Häkkinen Fixed svn properties, 2nd try.
(edit) @259   16 years Jari Häkkinen Fixed svn properties. Added $ string.
(edit) @258   16 years Jari Häkkinen Changed default server to the demo server, default user to base2.
(edit) @257   16 years mattias Initial import of webservice modules in Perl and R
(edit) @256   16 years Jari Häkkinen Adding directory for web services clients from thep.
(edit) @255   16 years Johan Enell made some changes in the printing methods
(edit) @254   16 years Johan Enell prints the spot data
(edit) @253   16 years Johan Enell BASEFile prints spot data
(edit) @252   16 years Johan Enell Calculates RankProduct? and creates output
(edit) @251   16 years Johan Enell changed getCount
(edit) @250   16 years Johan Enell there were some buggs …
(edit) @249   16 years Johan Enell removed some warnings
(edit) @248   16 years Johan Enell major changes to basefile some methods are deprecated and will be removed
(edit) @247   16 years Johan Enell Added BASEFileAssaySection
(edit) @246   16 years Johan Enell RankProduct? calculates the rp correct
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