| #1317 |
base.thep.lu.se is moving to https
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new
|
task
|
blocker
|
|
not classified
|
| #267 |
Change qQuantilerNormalization underlying binary to use the new BFS format
|
assigned
|
task
|
critical
|
ZZ Normalization package v1.1
|
net.sf.basedb.normalizers
|
| #43 |
Add request for proper default permissions (se.lu.thep.affymetrix).
|
new
|
enhancement
|
major
|
ZZ Other tickets
|
se.lu.thep.affymetrix
|
| #50 |
create a BASE2 plug-in for se.lu.thep.WeNNI
|
assigned
|
task
|
major
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
| #70 |
Add releasing procedure to se.lu.thep.affymetrix
|
new
|
task
|
major
|
ZZ Other tickets
|
se.lu.thep.affymetrix
|
| #78 |
Spike Lowess (se.lu.onk.lowess)
|
new
|
task
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #80 |
QQPlot
|
new
|
task
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #81 |
Merge on genesymbol
|
new
|
task
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #82 |
COPA
|
new
|
task
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #85 |
Pinbased normalization for VirtualArray data
|
new
|
enhancement
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #86 |
BasicReporter and BasicSpot (se.lu.onk.BaseFile)
|
new
|
enhancement
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #87 |
AnnotationFilter (se.lu.onk.AnnotationFilter)
|
new
|
defect
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #96 |
Make the se.lu.thep.affymetrix plug-in compatible with the auto-installation wizard
|
new
|
enhancement
|
major
|
ZZ Other tickets
|
se.lu.thep.affymetrix
|
| #147 |
WeNNI for BASE2 should support the automatic plug-in installation feature of BASE
|
new
|
enhancement
|
major
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
| #160 |
wenni and the underlying super class should be abortable (se.lu.thep.WeNNI)
|
assigned
|
enhancement
|
major
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
| #169 |
Running two "New root bioassay set" jobs at the same time makes the second to finish crash
|
new
|
defect
|
major
|
ZZ Other tickets
|
se.lu.thep.affymetrix
|
| #172 |
Why is there a check for LIBTOOL in configure.ac in the WeNNI project?
|
new
|
task
|
major
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
| #185 |
External binary plugins should be interruptable from BASE.
|
assigned
|
enhancement
|
major
|
ZZ Other tickets
|
not classified
|
| #188 |
Add IGV as an extension similarly to MEV
|
new
|
task
|
major
|
ZZ A wish list
|
not classified
|
| #209 |
Export of data to data repositories such as GEO and ArrayExpress
|
new
|
task
|
major
|
ZZ A wish list
|
not classified
|
| #210 |
net.sf.basedb.normalizers: Add proper 2-channel support to qQuantileNormalizer
|
new
|
defect
|
major
|
ZZ Normalization package v1.2
|
net.sf.basedb.normalizers
|
| #225 |
qQuantiler should select all assays as reference by default
|
assigned
|
Request
|
major
|
ZZ Normalization package v1.1
|
net.sf.basedb.normalizers
|
| #244 |
Create a SAM plug-in
|
new
|
Request
|
major
|
ZZ A wish list
|
not classified
|
| #250 |
Add GSEA as an extension
|
new
|
Request
|
major
|
ZZ A wish list
|
not classified
|
| #253 |
GeneSpring connector
|
new
|
Request
|
major
|
ZZ A wish list
|
not classified
|
| #254 |
Is Chipster something for BASE, should it be integrated similarly to MeV
|
new
|
Request
|
major
|
ZZ A wish list
|
not classified
|
| #256 |
Java web start enable data visualizer
|
new
|
Request
|
major
|
ZZ A wish list
|
not classified
|
| #260 |
Restructure tab2mage repository such that releases can be tagged
|
new
|
task
|
major
|
ZZ Other tickets
|
not classified
|
| #261 |
Create proper release packages of tab2mage plugins
|
new
|
task
|
major
|
ZZ Other tickets
|
not classified
|
| #262 |
Tab2Mage exporter exception: Can't use an unsaved item in query: Annotation set[new]
|
new
|
defect
|
major
|
ZZ Other tickets
|
not classified
|
| #268 |
Refactor qQuantileNormalizer plugin to use the ExternalProgramExecutor plugin
|
assigned
|
task
|
major
|
ZZ Normalization package v1.1
|
net.sf.basedb.normalizers
|
| #306 |
Create package for supporting external files on Amazon S3
|
new
|
Request
|
major
|
ZZ A wish list
|
not classified
|
| #463 |
Illumina expression background correction (version 1.7) does not ask for required permissions to write file
|
new
|
defect
|
major
|
ZZ Illumina package v1.8
|
net.sf.basedb.illumina
|
| #531 |
BASE1 plugin - Transformation: Merge replicates
|
new
|
enhancement
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #588 |
Update extensions to target Java 1.7 and BASE 3.3
|
new
|
task
|
major
|
|
not classified
|
| #39 |
create reporter list (se.lu.onk.ztest)
|
new
|
enhancement
|
minor
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #56 |
rename component onk.lu.se to be se.lu.onk -- split into several packages
|
new
|
defect
|
minor
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #74 |
unmappable character for encoding UTF8 Copyright (C) Jari Häkkinen (se.lu.thep.affymetrix)
|
new
|
defect
|
trivial
|
ZZ Other tickets
|
se.lu.thep.affymetrix
|
| #158 |
README in PluginUtilities refers to AbstractRunBinary.jar
|
assigned
|
defect
|
trivial
|
ZZ Other tickets
|
not classified
|
