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Ticket Summary Status Owner Type Priority Milestone
#267 Change qQuantilerNormalization underlying binary to use the new BFS format assigned Jari Häkkinen task critical ZZ Normalization package v1.1
#43 Add request for proper default permissions (se.lu.thep.affymetrix). new Jari Häkkinen enhancement major ZZ Other tickets
#70 Add releasing procedure to se.lu.thep.affymetrix new Jari Häkkinen task major ZZ Other tickets
#78 Spike Lowess (se.lu.onk.lowess) new Jari Häkkinen task major ZZ Other tickets
#80 QQPlot new Jari Häkkinen task major ZZ Other tickets
#81 Merge on genesymbol new Jari Häkkinen task major ZZ Other tickets
#82 COPA new Jari Häkkinen task major ZZ Other tickets
#85 Pinbased normalization for VirtualArray data new Jari Häkkinen enhancement major ZZ Other tickets
#86 BasicReporter and BasicSpot (se.lu.onk.BaseFile) new Jari Häkkinen enhancement major ZZ Other tickets
#87 AnnotationFilter (se.lu.onk.AnnotationFilter) new Jari Häkkinen defect major ZZ Other tickets
#96 Make the se.lu.thep.affymetrix plug-in compatible with the auto-installation wizard new Jari Häkkinen enhancement major ZZ Other tickets
#119 Create rank invariant normalizer reopened Martin Svensson task major ZZ Normalization package v1.1
#144 R plug-in framework new Johan Enell task major ZZ A wish list
#147 WeNNI for BASE2 should support the automatic plug-in installation feature of BASE new Jari Häkkinen enhancement major se.lu.thep.wenni 0.7
#153 Autoconf issues in se.lu.thep.WeNNI new Peter Johansson task major se.lu.thep.wenni 0.7
#160 wenni and the underlying super class should be abortable (se.lu.thep.WeNNI) assigned Jari Häkkinen enhancement major se.lu.thep.wenni 0.7
#172 Why is there a check for LIBTOOL in configure.ac in the WeNNI project? new Jari Häkkinen task major se.lu.thep.wenni 0.7
#185 External binary plugins should be interruptable from BASE. assigned Jari Häkkinen enhancement major ZZ Other tickets
#209 Export of data to data repositories such as GEO and ArrayExpress new Jari Häkkinen task major ZZ A wish list
#210 net.sf.basedb.normalizers: Add proper 2-channel support to qQuantileNormalizer new Jari Häkkinen defect major ZZ Normalization package v1.2
#211 Request: R/G quantile normalization new Martin Svensson Request major ZZ A wish list
#225 qQuantiler should select all assays as reference by default assigned Jari Häkkinen Request major ZZ Normalization package v1.1
#244 Create a SAM plug-in new Jari Häkkinen Request major ZZ A wish list
#250 Add GSEA as an extension new Jari Häkkinen Request major ZZ A wish list
#253 GeneSpring connector new Jari Häkkinen Request major ZZ A wish list
#254 Is Chipster something for BASE, should it be integrated similarly to MeV new Jari Häkkinen Request major ZZ A wish list
#256 Java web start enable data visualizer new Jari Häkkinen Request major ZZ A wish list
#260 Restructure tab2mage repository such that releases can be tagged new Jari Häkkinen task major ZZ Other tickets
#261 Create proper release packages of tab2mage plugins new Jari Häkkinen task major ZZ Other tickets
#268 Refactor qQuantileNormalizer plugin to use the ExternalProgramExecutor plugin assigned Jari Häkkinen task major ZZ Normalization package v1.1
#531 BASE1 plugin - Transformation: Merge replicates new Jari Häkkinen enhancement major ZZ Other tickets
#532 reggie QC wizard for additional QC measurements outside of routine new Nicklas Nordborg Request major Reggie v4.x
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