| #1317 |
base.thep.lu.se is moving to https
|
new
|
Jari Häkkinen
|
blocker
|
|
not classified
|
| #229 |
Implement API for additional GenePattern web services
|
assigned
|
Nicklas Nordborg
|
critical
|
ZZ GenePattern integration v1.0
|
net.sf.basedb.genepattern
|
| #267 |
Change qQuantilerNormalization underlying binary to use the new BFS format
|
assigned
|
Jari Häkkinen
|
critical
|
ZZ Normalization package v1.1
|
net.sf.basedb.normalizers
|
| #50 |
create a BASE2 plug-in for se.lu.thep.WeNNI
|
assigned
|
Jari Häkkinen
|
major
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
| #70 |
Add releasing procedure to se.lu.thep.affymetrix
|
new
|
Jari Häkkinen
|
major
|
ZZ Other tickets
|
se.lu.thep.affymetrix
|
| #78 |
Spike Lowess (se.lu.onk.lowess)
|
new
|
Jari Häkkinen
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #80 |
QQPlot
|
new
|
Jari Häkkinen
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #81 |
Merge on genesymbol
|
new
|
Jari Häkkinen
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #82 |
COPA
|
new
|
Jari Häkkinen
|
major
|
ZZ Other tickets
|
se.lu.onk series plug-ins
|
| #119 |
Create rank invariant normalizer
|
reopened
|
Martin Svensson
|
major
|
ZZ Normalization package v1.1
|
net.sf.basedb.normalizers
|
| #144 |
R plug-in framework
|
new
|
Johan Enell
|
major
|
ZZ A wish list
|
not classified
|
| #153 |
Autoconf issues in se.lu.thep.WeNNI
|
new
|
Peter Johansson
|
major
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
| #172 |
Why is there a check for LIBTOOL in configure.ac in the WeNNI project?
|
new
|
Jari Häkkinen
|
major
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
| #188 |
Add IGV as an extension similarly to MEV
|
new
|
Jari Häkkinen
|
major
|
ZZ A wish list
|
not classified
|
| #209 |
Export of data to data repositories such as GEO and ArrayExpress
|
new
|
Jari Häkkinen
|
major
|
ZZ A wish list
|
not classified
|
| #218 |
Proof-of-concept: run a selected GenePattern module from BASE
|
assigned
|
Nicklas Nordborg
|
major
|
ZZ GenePattern integration v1.0
|
net.sf.basedb.genepattern
|
| #219 |
Setup a GenePattern server for testing
|
new
|
Nicklas Nordborg
|
major
|
ZZ GenePattern integration v1.0
|
net.sf.basedb.genepattern
|
| #234 |
Proof-of-concept: run a selected GenePattern visualization module from BASE
|
assigned
|
Nicklas Nordborg
|
major
|
ZZ GenePattern integration v1.0
|
net.sf.basedb.genepattern
|
| #260 |
Restructure tab2mage repository such that releases can be tagged
|
new
|
Jari Häkkinen
|
major
|
ZZ Other tickets
|
not classified
|
| #261 |
Create proper release packages of tab2mage plugins
|
new
|
Jari Häkkinen
|
major
|
ZZ Other tickets
|
not classified
|
| #268 |
Refactor qQuantileNormalizer plugin to use the ExternalProgramExecutor plugin
|
assigned
|
Jari Häkkinen
|
major
|
ZZ Normalization package v1.1
|
net.sf.basedb.normalizers
|
| #325 |
Import files from a HDFS directory as external file items
|
new
|
Nicklas Nordborg
|
major
|
ZZ HDFS package v1.1
|
net.sf.basedb.hdfs
|
| #588 |
Update extensions to target Java 1.7 and BASE 3.3
|
new
|
Jari Häkkinen
|
major
|
|
not classified
|
| #696 |
Implement some skin examples for BASE
|
new
|
|
major
|
Skin-collection 1.0
|
net.sf.basedb.skincollection
|
| #1211 |
Release exporter changes due to TMA specimen importer
|
new
|
Nicklas Nordborg
|
major
|
Reggie v4.x
|
net.sf.basedb.reggie
|
| #1311 |
Changes in frozen tissue importer due to changes in referral forms
|
new
|
Nicklas Nordborg
|
major
|
Reggie v4.x
|
net.sf.basedb.reggie
|
| #1396 |
Implement an login extension for WebAuthn
|
accepted
|
Nicklas Nordborg
|
major
|
WebAuthn extension v1.0
|
net.sf.basedb.webauthn
|
| #1483 |
Add support for using the WGS blood items in the Genotype QC wizard
|
new
|
Nicklas Nordborg
|
major
|
Reggie v4.48
|
net.sf.basedb.reggie
|
| #1487 |
Implement a new Genotype QC wizard for validating WGS data
|
new
|
Nicklas Nordborg
|
major
|
Reggie v4.48
|
net.sf.basedb.reggie
|
| #1490 |
Switch to BASE 3.19.9
|
new
|
Nicklas Nordborg
|
major
|
Reggie v4.48
|
net.sf.basedb.reggie
|
| #71 |
write HowToRelease document for se.lu.thep.WeNNI
|
new
|
Peter Johansson
|
minor
|
se.lu.thep.wenni 0.7
|
se.lu.thep.wenni
|
