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Ticket Summary Owner Type Priority Milestone Component
#250 Add GSEA as an extension Jari Häkkinen Request major ZZ A wish list not classified
#188 Add IGV as an extension similarly to MEV Jari Häkkinen task major ZZ A wish list not classified
#70 Add releasing procedure to se.lu.thep.affymetrix Jari Häkkinen task major ZZ Other tickets se.lu.thep.affymetrix
#43 Add request for proper default permissions (se.lu.thep.affymetrix). Jari Häkkinen enhancement major ZZ Other tickets se.lu.thep.affymetrix
#87 AnnotationFilter (se.lu.onk.AnnotationFilter) Jari Häkkinen defect major ZZ Other tickets se.lu.onk series plug-ins
#153 Autoconf issues in se.lu.thep.WeNNI Peter Johansson task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#531 BASE1 plugin - Transformation: Merge replicates Jari Häkkinen enhancement major ZZ Other tickets se.lu.onk series plug-ins
#1317 base.thep.lu.se is moving to https Jari Häkkinen task blocker not classified
#86 BasicReporter and BasicSpot (se.lu.onk.BaseFile) Jari Häkkinen enhancement major ZZ Other tickets se.lu.onk series plug-ins
#1311 Changes in frozen tissue importer due to changes in referral forms Nicklas Nordborg task major Reggie v4.x net.sf.basedb.reggie
#585 Cluster start date shold be a date+time annotation Nicklas Nordborg enhancement major Reggie v4.x net.sf.basedb.reggie
#510 Consistent use of terms in the lab protocols and Reggie interface johan enhancement major Reggie v4.x net.sf.basedb.reggie
#82 COPA Jari Häkkinen task major ZZ Other tickets se.lu.onk series plug-ins
#244 Create a SAM plug-in Jari Häkkinen Request major ZZ A wish list not classified
#306 Create package for supporting external files on Amazon S3 Jari Häkkinen Request major ZZ A wish list not classified
#261 Create proper release packages of tab2mage plugins Jari Häkkinen task major ZZ Other tickets not classified
#39 create reporter list (se.lu.onk.ztest) Jari Häkkinen enhancement minor ZZ Other tickets se.lu.onk series plug-ins
#209 Export of data to data repositories such as GEO and ArrayExpress Jari Häkkinen task major ZZ A wish list not classified
#253 GeneSpring connector Jari Häkkinen Request major ZZ A wish list not classified
#476 Get list of blood samples where at least one RNA extract exists Nicklas Nordborg task major Reggie v4.x net.sf.basedb.reggie
#413 Handle re-running a sample on Caliper with Hi-Sense option Nicklas Nordborg enhancement major Reggie v4.x net.sf.basedb.reggie
#463 Illumina expression background correction (version 1.7) does not ask for required permissions to write file Jari Häkkinen defect major ZZ Illumina package v1.8 net.sf.basedb.illumina
#696 Implement some skin examples for BASE task major Skin-collection 1.0 net.sf.basedb.skincollection
#325 Import files from a HDFS directory as external file items Nicklas Nordborg task major ZZ HDFS package v1.1 net.sf.basedb.hdfs
#919 Include information about deliverd reports in case summary Nicklas Nordborg enhancement minor Reggie v4.x net.sf.basedb.reggie
#254 Is Chipster something for BASE, should it be integrated similarly to MeV Jari Häkkinen Request major ZZ A wish list not classified
#256 Java web start enable data visualizer Jari Häkkinen Request major ZZ A wish list not classified
#584 Make it possible to use different volumes for different RNA in Create mRNA plate wizard Nicklas Nordborg enhancement major Reggie v4.x net.sf.basedb.reggie
#96 Make the se.lu.thep.affymetrix plug-in compatible with the auto-installation wizard Jari Häkkinen enhancement major ZZ Other tickets se.lu.thep.affymetrix
#1343 Manual genotype check of standalone VCF files Nicklas Nordborg task major Reggie v4.34 net.sf.basedb.reggie
#81 Merge on genesymbol Jari Häkkinen task major ZZ Other tickets se.lu.onk series plug-ins
#210 net.sf.basedb.normalizers: Add proper 2-channel support to qQuantileNormalizer Jari Häkkinen defect major ZZ Normalization package v1.2 net.sf.basedb.normalizers
#695 New reporter annotations Nicklas Nordborg enhancement major Reggie v4.x net.sf.basedb.reggie
#85 Pinbased normalization for VirtualArray data Jari Häkkinen enhancement major ZZ Other tickets se.lu.onk series plug-ins
#80 QQPlot Jari Häkkinen task major ZZ Other tickets se.lu.onk series plug-ins
#532 reggie QC wizard for additional QC measurements outside of routine Nicklas Nordborg Request major Reggie v4.x net.sf.basedb.reggie
#586 Register end date+time for clustering Nicklas Nordborg enhancement major Reggie v4.x net.sf.basedb.reggie
#1211 Release exporter changes due to TMA specimen importer Nicklas Nordborg task major Reggie v4.x net.sf.basedb.reggie
#56 rename component onk.lu.se to be se.lu.onk -- split into several packages Jari Häkkinen defect minor ZZ Other tickets se.lu.onk series plug-ins
#211 Request: R/G quantile normalization Martin Svensson Request major ZZ A wish list net.sf.basedb.normalizers
#260 Restructure tab2mage repository such that releases can be tagged Jari Häkkinen task major ZZ Other tickets not classified
#144 R plug-in framework Johan Enell task major ZZ A wish list not classified
#169 Running two "New root bioassay set" jobs at the same time makes the second to finish crash Jari Häkkinen defect major ZZ Other tickets se.lu.thep.affymetrix
#752 Schedule new RNAQC from Flagged RNA wizard Nicklas Nordborg enhancement major Reggie v4.x net.sf.basedb.reggie
#219 Setup a GenePattern server for testing Nicklas Nordborg task major ZZ GenePattern integration v1.0 net.sf.basedb.genepattern
#78 Spike Lowess (se.lu.onk.lowess) Jari Häkkinen task major ZZ Other tickets se.lu.onk series plug-ins
#262 Tab2Mage exporter exception: Can't use an unsaved item in query: Annotation set[new] Jari Häkkinen defect major ZZ Other tickets not classified
#74 unmappable character for encoding UTF8 Copyright (C) Jari Häkkinen (se.lu.thep.affymetrix) Jari Häkkinen defect trivial ZZ Other tickets se.lu.thep.affymetrix
#588 Update extensions to target Java 1.7 and BASE 3.3 Jari Häkkinen task major not classified
#147 WeNNI for BASE2 should support the automatic plug-in installation feature of BASE Jari Häkkinen enhancement major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#172 Why is there a check for LIBTOOL in configure.ac in the WeNNI project? Jari Häkkinen task major se.lu.thep.wenni 0.7 se.lu.thep.wenni
#71 write HowToRelease document for se.lu.thep.WeNNI Peter Johansson task minor se.lu.thep.wenni 0.7 se.lu.thep.wenni
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