Opened 13 years ago
Closed 12 years ago
#113 closed enhancement (fixed)
Add support for more variations of Illumina detection P-value calculations
Reported by: | Jari Häkkinen | Owned by: | Jari Häkkinen |
---|---|---|---|
Priority: | major | Milestone: | Illumina package v1.4 |
Component: | net.sf.basedb.illumina | Keywords: | |
Cc: |
Description (last modified by )
The methods used by BeadStudio is described in the BeadStudio Gene Expression Module (GX)
The whole genome beadchips use one algorithm whereas DASL, miRNA, VeraCode DASL, and Focused Arrays all use another algorithm.
Currently, the plug-in features only the WG version.
Change History (7)
comment:1 Changed 13 years ago by
Milestone: | → Illumina package v1.x |
---|
comment:2 Changed 12 years ago by
Description: | modified (diff) |
---|---|
Milestone: | Illumina package v1.x → Illumina package v1.4 |
Owner: | changed from Nicklas Nordborg to Jari Häkkinen |
Status: | new → assigned |
Summary: | Add support for Illumina focused arrays in Illumina detection P-value plug-in → Add support for more variation of Illumina detection P-value caluclations plug-in |
comment:3 Changed 12 years ago by
Summary: | Add support for more variation of Illumina detection P-value caluclations plug-in → Add support for more variations of Illumina detection P-value caluclations |
---|
comment:4 Changed 12 years ago by
comment:5 Changed 12 years ago by
Summary: | Add support for more variations of Illumina detection P-value caluclations → Add support for more variations of Illumina detection P-value calculations |
---|
comment:6 Changed 12 years ago by
Description: | modified (diff) |
---|
comment:7 Changed 12 years ago by
Resolution: | → fixed |
---|---|
Status: | assigned → closed |
(In [1167]) Fixes #113. The code change in changeset:1114 is valid, fixed docs.
Note: See
TracTickets for help on using
tickets.
(In [1114]) Addresses #113. The Pvalue calculation is in place. Need to figure details of std and average calculations.