Changes between Initial Version and Version 3 of Ticket #1243


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Timestamp:
May 18, 2020, 1:19:10 PM (18 months ago)
Author:
Nicklas Nordborg
Comment:

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  • Ticket #1243

    • Property Status changed from new to closed
    • Property Resolution changed from to fixed
  • Ticket #1243 – Description

    initial v3  
    1 This is related to #1242. The `novaseq_status.sh` script doesn't include enough information for Reggie (in `NovaSeqSignalHandler` class) to be able determine how many *.cbcl files to expect when the sequencing has been completed. The `RunInfo.xml` file have the same numbers for `LaneCount` (=2), `SurfaceCount` (=2), `SwathCount` (=2) and `TileCount` (=78) for both SP and S2 flow cells. This causes Reggie to expect 436 cbcl files (for 218 cycles) in both cases. In reality the S1 flow cell creates 872 flow cells. The only visible difference in `RunInfo.xml` is the number of `<Tile>` tags which is 312 for SP and 624 for S1 flow cells. There is also a `<FlowCellMode>` tag in `RunParameters.xml` which can be used (the value is either SP or S1).
     1This is related to #1242. The `novaseq_status.sh` script doesn't include enough information for Reggie (in `NovaSeqSignalHandler` class) to be able determine how many *.cbcl files to expect when the sequencing has been completed. The `RunInfo.xml` file have the same numbers for `LaneCount` (=2), `SurfaceCount` (=2), `SwathCount` (=2) and `TileCount` (=78) for both SP and S2 flow cells. This causes Reggie to expect 436 cbcl files (for 218 cycles) in both cases. In reality the S1 flow cell creates 872 cbcl files. The only visible difference in `RunInfo.xml` is the number of `<Tile>` tags which is 312 for SP and 624 for S1 flow cells. There is also a `<FlowCellMode>` tag in `RunParameters.xml` which can be used (the value is either SP or S1).