Opened 13 years ago

Last modified 11 years ago

#169 new defect

Running two "New root bioassay set" jobs at the same time makes the second to finish crash

Reported by: Nicklas Nordborg Owned by: Jari Häkkinen
Priority: major Milestone: ZZ Other tickets
Component: se.lu.thep.affymetrix Keywords:
Cc:

Description

Moved from http://base.thep.lu.se/ticket/1224.

This is at least true or affymetrix. I wanted to create two new root bioassay sets by runnign two different plugins. The first to finish ended succesfully, the second finished with the below message. Nothing strange really but can it be avoided?

Error: Permission denied: The item RawBioAssay[id=14538] was modified by another transaction. 

net.sf.basedb.core.ItemModifiedException: Permission denied: The item RawBioAssay[id=14538] was modified by another transaction.
at net.sf.basedb.core.HibernateUtil.commit(HibernateUtil.java:1025)
at net.sf.basedb.core.DbControl.commit(DbControl.java:410)
at se.lu.thep.affymetrix.AbstractExternalBinaryPlugin.run(AbstractExternalBinaryPlugin.java:264)
at net.sf.basedb.core.PluginExecutionRequest.invoke(PluginExecutionRequest.java:106)
at net.sf.basedb.clients.jobagent.executors.ThreadJobExecutor.executeJob(ThreadJobExecutor.java:109)
at net.sf.basedb.clients.jobagent.executors.ThreadJobExecutor.main(ThreadJobExecutor.java:202)
Caused by: org.hibernate.StaleObjectStateException: Row was updated or deleted by another transaction (or unsaved-value mapping was incorrect): [net.sf.basedb.core.data.RawBioAssayData#14538]
at org.hibernate.persister.entity.AbstractEntityPersister.check(AbstractEntityPersister.java:1792)
at org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:2435)
at org.hibernate.persister.entity.AbstractEntityPersister.updateOrInsert(AbstractEntityPersister.java:2335)
at org.hibernate.persister.entity.AbstractEntityPersister.update(AbstractEntityPersister.java:2635)
at org.hibernate.action.EntityUpdateAction.execute(EntityUpdateAction.java:115)
at org.hibernate.engine.ActionQueue.execute(ActionQueue.java:279)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:263)
at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:168)
at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321)
at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:50)
at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1027)
at org.hibernate.impl.SessionImpl.managedFlush(SessionImpl.java:365)
at org.hibernate.transaction.JDBCTransaction.commit(JDBCTransaction.java:137)
at net.sf.basedb.core.HibernateUtil.commit(HibernateUtil.java:1016)
... 5 more

Change History (1)

comment:1 Changed 11 years ago by Jari Häkkinen

Milestone: ZZ Other tickets
Note: See TracTickets for help on using tickets.