#221 closed task (fixed)
Configure GenePattern server
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | critical | Milestone: | ZZ GenePattern integration v1.0 |
| Component: | net.sf.basedb.genepattern | Keywords: | |
| Cc: |
Description
Each user must be able to configure which GenePattern? server to use and the login/password required to access it.
It would be nice for a user to specify several servers and then be able to select which one to use for a certain calculation. One of the servers could be marked as default.
I think this can go into the Extensions menu in a similar fashion as for the MeV launcher.
Change History (5)
comment:1 Changed 14 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
comment:2 Changed 14 years ago by
| Resolution: | fixed |
|---|---|
| Status: | closed → reopened |
It will not work to store the GenePattern? options with SessionControl.setUserClientSetting() since those settings are only available in the web client and not available when executing the a plug-in. In principle it should work to use SessionControl.setUserDefaultSetting() instead, but there is a problem that the settings are not written to the database until the user logs out which means that new and modified GenePattern? server settings are not visible to the plug-in unless the user first logs out and then log in again.
comment:3 Changed 14 years ago by
| Resolution: | → fixed |
|---|---|
| Status: | reopened → closed |
(In [1108]) Fixes #221: Configure GenePattern? server
The settings are now saved to the databas as user default settings.
comment:4 Changed 14 years ago by
(In [1117]) References #221: Configure GenePattern? server
Changed the AJAX calls to a new servlet. Now requires BASE 2.13 since that depends on new functionality in BASE.
comment:5 Changed 14 years ago by
(In [1126]) References #221: Configure GenePattern? server
Added field for URL to BASE. This seems to be the easiest way to let the plug-in know about the BASE web server. Also moved the "test" button back to it's previous location.
(In [1102]) Fixes #221: Configure GenePattern? server