Opened 14 years ago
Last modified 14 years ago
#234 assigned task
Proof-of-concept: run a selected GenePattern visualization module from BASE
| Reported by: | Nicklas Nordborg | Owned by: | Nicklas Nordborg |
|---|---|---|---|
| Priority: | major | Milestone: | ZZ GenePattern integration v1.0 |
| Component: | net.sf.basedb.genepattern | Keywords: | |
| Cc: |
Description
We will use the ComparativeMarkerSelectionViewer? module which is used in the tutorial: http://www.broad.mit.edu/cancer/software/genepattern/tutorial/gp_tutorial.html
Change History (3)
comment:1 Changed 14 years ago by
| Status: | new → assigned |
|---|
comment:2 Changed 14 years ago by
comment:3 Changed 14 years ago by
(In [1134]) References #234: Proof-of-concept: run a selected GenePattern? visualization module from BASE
The process is now a bit more generic. In theory it should be possible to run any visualizer module. Got rid of hard-coded urls to servers.
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(In [1132]) References #234: Proof-of-concept: run a selected GenePattern? visualization module from BASE
This is a first attempt to run a visualization module. The main procedure is work and the really hard parts (starting the visualization applet with correct parameters and support files) have been done. But don't expect this to work outside of my development machine yet.