Timeline



May 20, 2022: Today

2:27 PM Changeset [6746] by Nicklas Nordborg
References #1396: Implement an login extension for WebAuthn?
11:40 AM Changeset [6745] by Nicklas Nordborg
References #1396: Implement an login extension for WebAuthn?
9:06 AM Changeset [6744] by Nicklas Nordborg
References #1396: Implement an login extension for WebAuthn? Stared to …

May 19, 2022: Yesterday

1:30 PM Changeset [6743] by Nicklas Nordborg
References #1396: Implement an login extension for WebAuthn? Started …
8:30 AM Changeset [6742] by Nicklas Nordborg
References #1396: Implement an login extension for WebAuthn? Initial …

May 17, 2022:

1:27 PM Changeset [6741] by Nicklas Nordborg
References #1396: Implement an login extension for WebAuthn? Created trunk.
1:27 PM Changeset [6740] by Nicklas Nordborg
References #1396: Implement an login extension for WebAuthn? Created …
1:25 PM net.sf.basedb.webauthn created by Nicklas Nordborg
Added main page for the WebAuthn? extension
1:14 PM Ticket #1396 (Implement an login extension for WebAuthn) created by Nicklas Nordborg
WebAuthn is an authentication protocol that is standardized by W3C. …

May 10, 2022:

2:38 PM Changeset [6739] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
2:37 PM Changeset [6738] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
11:08 AM Changeset [6737] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
8:47 AM Changeset [6736] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …

May 9, 2022:

12:55 PM Ticket #1395 (Rename "Open Grid scheduler" to "Job scheduler") closed by Nicklas Nordborg
fixed: In 6735: […]
12:55 PM Changeset [6735] by Nicklas Nordborg
Fixes #1395: Rename "Open Grid scheduler" to "Job scheduler"
11:47 AM Ticket #1395 (Rename "Open Grid scheduler" to "Job scheduler") created by Nicklas Nordborg
In [6682] Open Grid Scheduler was replaced with Job scheduler
11:40 AM Changeset [6734] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …

May 6, 2022:

2:00 PM Changeset [6733] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …

May 5, 2022:

2:57 PM Changeset [6732] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
2:35 PM Changeset [6731] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
11:38 AM Changeset [6730] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
11:02 AM Ticket #1394 (Error when creating an outtake with FlowThrough items) closed by Nicklas Nordborg
fixed: In [6729]: The value of the option should be FLOW_THROUGH and not …
9:47 AM Changeset [6729] by Nicklas Nordborg
Fixes #1395: Error when creating an outtake with FlowThrough? items …
9:44 AM Ticket #1394 (Error when creating an outtake with FlowThrough items) created by Nicklas Nordborg
It seems like it is impossible to create a sample outtake with …
9:32 AM Changeset [6728] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
8:44 AM Changeset [6727] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …

May 4, 2022:

2:07 PM Changeset [6726] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
11:18 AM Changeset [6725] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
11:07 AM Changeset [6724] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
9:41 AM Changeset [6723] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
7:33 AM Changeset [6722] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …

May 3, 2022:

2:24 PM Changeset [6721] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …
9:25 AM Changeset [6720] by Nicklas Nordborg
References #1390: Updates to wizards that assume tubes are marked with …

May 2, 2022:

1:49 PM Changeset [6719] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
9:37 AM Changeset [6718] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …

Apr 29, 2022:

2:22 PM Ticket #1393 (Release exporter changes due to Oncoarray data) created by Nicklas Nordborg
In ticket #1346, we added data from Oncoarray SNP chips to lorry. A …
2:09 PM Tickets #585,​586 batch updated by Nicklas Nordborg
wontfix: This is not needed since sequencing machines do clustering as part of …
2:07 PM Ticket #476 (Get list of blood samples where at least one RNA extract exists) closed by Nicklas Nordborg
worksforme: This should not be too complicated with the help of BASE features that …
1:41 PM Changeset [6717] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
12:52 PM Changeset [6716] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
11:13 AM Changeset [6715] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
9:20 AM Changeset [6714] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …

Apr 28, 2022:

9:43 AM Ticket #1391 (Implement a way to insert a "Reggie was updated..." log entry when ...) closed by Nicklas Nordborg
fixed: In 6713: […]
9:43 AM Changeset [6713] by Nicklas Nordborg
Fixes #1391: Implement a way to insert a "Reggie was updated..." log …
9:07 AM Ticket #1392 (The default configuration is missing a JAVA_HOME declaration in the ...) closed by Nicklas Nordborg
fixed: In 6712: […]
9:07 AM Changeset [6712] by Nicklas Nordborg
Fixes #1392: The default configuration is missing a JAVA_HOME …
9:05 AM Ticket #1392 (The default configuration is missing a JAVA_HOME declaration in the ...) created by Nicklas Nordborg
Without this, vardict is selecting the first java that it can find on …

Apr 27, 2022:

2:55 PM Ticket #1391 (Implement a way to insert a "Reggie was updated..." log entry when ...) created by Nicklas Nordborg
The "Installation wizard" can always be used to check if a new Reggie …
2:50 PM Ticket #1390 (Updates to wizards that assume tubes are marked with item name) created by Nicklas Nordborg
Samples that have been handled externally and then transferred to the …
2:41 PM Changeset [6711] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
11:48 AM Changeset [6710] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
11:36 AM Changeset [6709] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
11:04 AM Changeset [6708] by Nicklas Nordborg
Changes for future release Job scheduler 1.7
11:03 AM Milestone Job scheduler extension v1.6 completed
See the Job scheduler extension page for …
11:02 AM net.sf.basedb.opengrid edited by Nicklas Nordborg
Released Job scheduler extension 1.6 (diff)
11:00 AM opengrid-1.6.tar.gz attached to net.sf.basedb.opengrid by Nicklas Nordborg
Job scheduler 1.6
10:58 AM Changeset [6707] by Nicklas Nordborg
Tagging Job scheduler 1.6
10:57 AM Changeset [6706] by Nicklas Nordborg
Preparing to release Job scheduler 1.6
9:46 AM Ticket #1389 (TMPDIR is re-defined twice when starting jobs) closed by Nicklas Nordborg
fixed: In 6705: […]
9:46 AM Changeset [6705] by Nicklas Nordborg
Fixes #1389: TMPDIR is re-defined twice when starting jobs No …
9:37 AM Ticket #1389 (TMPDIR is re-defined twice when starting jobs) created by Nicklas Nordborg
I found a problem when a cluster was configured with default value for …

Apr 26, 2022:

2:42 PM Changeset [6704] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
1:45 PM Changeset [6703] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
1:38 PM Changeset [6702] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
1:19 PM Changeset [6701] by Nicklas Nordborg
References #1388: Updates to registration of specimen handled by …
11:32 AM Ticket #1388 (Updates to registration of specimen handled by external lab) created by Nicklas Nordborg
There is a new test file with some changes that should take us a bit …
10:33 AM Ticket #1364 (Update to BASE 3.19) closed by Nicklas Nordborg
fixed
10:32 AM Changeset [6700] by Nicklas Nordborg
References #1365: Update to Lucene 9 Display Lucene version on the …
9:37 AM Ticket #1365 (Update to Lucene 9) closed by Nicklas Nordborg
fixed: In 6699: […]
9:37 AM Changeset [6699] by Nicklas Nordborg
Fixes #1365: Update to Lucene 9 Updated to Lucene 9.1

Apr 25, 2022:

11:19 AM Changeset [6698] by Nicklas Nordborg
Changes for future release Reggie 4.39
11:16 AM Milestone Reggie v4.38 completed
See Reggie extension page for more information.
11:15 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.38 (diff)
11:15 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.38 (diff)
11:12 AM reggie-4.38.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.38
11:11 AM Changeset [6697] by Nicklas Nordborg
Tagging Reggie 4.38
11:10 AM Changeset [6696] by Nicklas Nordborg
Preparing to release Reggie 4.38.
8:18 AM Changeset [6695] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Apr 22, 2022:

10:58 AM Ticket #1374 (Implement support for running jobs in a Singularity container) closed by Nicklas Nordborg
fixed
9:32 AM Changeset [6694] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
8:52 AM Changeset [6693] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Apr 21, 2022:

1:27 PM Changeset [6692] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:02 AM Changeset [6691] by Nicklas Nordborg
Changes for future release Job scheduler extension 1.6
10:01 AM Milestone Job scheduler extension v1.5 completed
See the Job scheduler extension page for …
10:00 AM PluginDownload edited by Nicklas Nordborg
Released Job scheduler extension 1.5 (diff)
9:59 AM net.sf.basedb.opengrid edited by Nicklas Nordborg
Released Job scheduler extension 1.5 (diff)
9:56 AM opengrid-1.5.tar.gz attached to net.sf.basedb.opengrid by Nicklas Nordborg
Job scheduler 1.5
9:54 AM Changeset [6690] by Nicklas Nordborg
Tagging Job scheduler extension 1.5
9:53 AM Changeset [6689] by Nicklas Nordborg
Preparing to release Job scheduler extension 1.5
9:37 AM Changeset [6688] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …
9:33 AM Ticket #1375 (Changes that are needed or useful for running jobs inside a container) closed by Nicklas Nordborg
fixed
9:22 AM net.sf.basedb.opengrid/install edited by Nicklas Nordborg
Update documentation for Job scheduler 1.5 (diff)
9:13 AM Ticket #1369 (Implement support for starting jobs without a queue system) closed by Nicklas Nordborg
fixed
9:09 AM Changeset [6687] by Nicklas Nordborg
References #1384: Add a (increasing) delay when submitting multiple …
9:07 AM Changeset [6686] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Apr 20, 2022:

2:46 PM Changeset [6685] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
2:11 PM Ticket #1387 (Reload reggie-config.xml) closed by Nicklas Nordborg
fixed: In 6684: […]
2:11 PM Changeset [6684] by Nicklas Nordborg
Fixes #1387: Reload reggie-config.xml
1:19 PM Changeset [6683] by Nicklas Nordborg
References #1387: Reload reggie-config.xml Added a method …
1:14 PM Ticket #1387 (Reload reggie-config.xml) created by Nicklas Nordborg
This can currently be done via the web interface on the Open Grid …
11:15 AM Changeset [6682] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:47 AM Changeset [6681] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:09 AM Changeset [6680] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
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