Timeline



Dec 12, 2007:

12:19 PM Changeset [518] by mbayer
integration of generated tab2mage file with the rest of the code is …

Dec 7, 2007:

5:16 PM Changeset [517] by mbayer
writer now also writes hybs section out but still needs to be …
3:06 PM Changeset [516] by mbayer
first two sections of tab2mage file now get generated ok
11:56 AM Changeset [515] by mbayer
problem with file writing fixed - file is now actually written to …

Dec 6, 2007:

1:09 PM Changeset [514] by mbayer
added missing class
1:04 PM Changeset [513] by mbayer
have implemented a skeleton writer class which writes a dummy tab2mage file

Dec 5, 2007:

11:13 AM Ticket #20 (extra values pass through) closed by Jari Häkkinen
duplicate: Moved to ticket:88 due to spam.
11:12 AM Ticket #88 (extra values pass through) created by Jari Häkkinen
Extravalues(_xc_) should be passed through to the next bioassayset. …
11:12 AM Ticket #18 (AnnotationFiletr) closed by Jari Häkkinen
duplicate: Moved to ticket:87 due to spam.
11:11 AM Ticket #87 (AnnotationFilter (se.lu.onk.AnnotationFilter)) created by Jari Häkkinen
AnnotationFilter cannot split the parameter "Annotation Values"
11:11 AM Ticket #16 (BasicReporter and BasicSpot) closed by Jari Häkkinen
duplicate: Moved to ticket:86 due to spam.
11:10 AM Ticket #86 (BasicReporter and BasicSpot (se.lu.onk.BaseFile)) created by Jari Häkkinen
the classes BasicReporter and BasicSpot should be added to BaseFile …
11:10 AM Ticket #11 (Pinbaes normalization) closed by Jari Häkkinen
duplicate: Moved to ticket:85 due to spam.
11:09 AM Ticket #85 (Pinbased normalization for VirtualArray data) created by Jari Häkkinen
Pinbased normalization shoul be able to handle data where block is …
11:09 AM Ticket #10 (ReplicateError) closed by Jari Häkkinen
duplicate: Moved to ticket:84 due to spam.
11:08 AM Ticket #84 (Change parameter in ReplicateError (se.lu.onk.ReplicateError)) created by Jari Häkkinen
Add value 'unlimited' to paremter sd limit.
11:08 AM Ticket #9 (Error in ReplicateError) closed by Jari Häkkinen
duplicate: Moved to ticket:83 due to spam.
11:07 AM Ticket #83 (ReplicateError: Error in ReplicateError) created by Jari Häkkinen
When running on a dataset with triplicate the result table is created …
11:06 AM Ticket #8 (COPA) closed by Jari Häkkinen
duplicate: Moved to ticket:82 due to spam.
11:05 AM Ticket #82 (COPA) created by Jari Häkkinen
A plug-in for the COPA analysis.
11:04 AM Ticket #7 (Merge on genesymbol) closed by Jari Häkkinen
duplicate
11:04 AM Ticket #6 (QQPlot) closed by Jari Häkkinen
duplicate
11:03 AM Ticket #5 (Center on assay) closed by Jari Häkkinen
duplicate
11:03 AM Ticket #4 (Spike Lowess) closed by Jari Häkkinen
duplicate
11:00 AM Ticket #81 (Merge on genesymbol) created by Jari Häkkinen
Merge on genesymbol. Some reporters have a list of genesymbols …
10:59 AM Ticket #80 (QQPlot) created by Jari Häkkinen
Draw a qqplot for each assay and describe everyting in a htmlfile Use …
10:58 AM Ticket #79 (Center on assay (se.lu.onk.Center)) created by Jari Häkkinen
Add function on median/mean center. Center on assay. Group assays to …
10:56 AM Ticket #78 (Spike Lowess (se.lu.onk.lowess)) created by Jari Häkkinen
Add the possibility to do spike normalization with lowess. Add a …

Dec 4, 2007:

3:46 PM Changeset [512] by mbayer
- have tied the interface to the importer plugin class now -- all …

Dec 3, 2007:

5:14 PM Changeset [511] by mbayer
- have tidied up the interface to the point where it is usable as it …

Nov 30, 2007:

12:00 PM Changeset [510] by mbayer
added html files for easier design of the interface -- these won't …

Nov 28, 2007:

6:11 PM Changeset [509] by dominic
updated changelog file
6:11 PM Changeset [508] by dominic
updated changelog file
6:10 PM Changeset [507] by dominic
updated changelog file
6:10 PM uk.ac.ebi.AnnotationTypeCvImporter edited by basepluginswiki
(diff)
6:08 PM uk.ac.ebi.AffyArrayDesignBatchImporter edited by basepluginswiki
(diff)
6:04 PM Changeset [506] by dominic
updated changelog file
6:04 PM Changeset [505] by dominic
updated chagelog file
5:59 PM Changeset [504] by dominic
updated read me file
5:59 PM Changeset [503] by dominic
updated read me anmd jar files
5:50 PM uk.ac.ebi.Tab2MageExporter edited by basepluginswiki
(diff)
5:48 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:41 PM Changeset [502] by dominic
updated read me text file
5:40 PM Changeset [501] by dominic
updated read me text file
5:37 PM Changeset [500] by dominic
updated read me text file
5:24 PM Changeset [499] by mbayer
added missing jar files for compilation so that project is self-contained
5:17 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:14 PM Changeset [498] by dominic
updated pooling text file
5:13 PM Changeset [497] by mbayer
- various specification related documents added (from Philippe) - have …
5:12 PM Changeset [496] by dominic
updated read me file
5:11 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:08 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
5:08 PM Changeset [495] by dominic
updated ebi-plugins-utils jar file
5:07 PM Changeset [494] by dominic
added Tab2Mage Importer version 2
5:04 PM Changeset [493] by dominic
added ebi-utils jar file
5:03 PM Changeset [492] by dominic
updated read me files
5:03 PM Changeset [491] by dominic
adding read me files
5:03 PM Changeset [490] by dominic
updated exporter read me and tab2mage exporter jar file
5:02 PM Changeset [489] by dominic
latest atcv importer
12:37 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:37 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:35 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:35 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:32 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)
12:30 PM uk.ac.ebi.Tab2MageImporter edited by basepluginswiki
(diff)

Nov 27, 2007:

6:21 PM Changeset [488] by dominic
updated exporter with comments for base 2.5 inhritance support
12:44 PM Changeset [487] by dominic
added a line to handle inherited annotation. Only compactible with BASE 2.5

Nov 23, 2007:

3:50 PM Changeset [486] by mbayer
first commit of this branch - have added JSP page for custom …

Nov 21, 2007:

2:34 PM Changeset [485] by Jari Häkkinen
Added Tab2MageImporter branch
2:31 PM Changeset [484] by Jari Häkkinen
Hm, I was supposed to copy Tab2MageImport to this branch.
2:30 PM Changeset [483] by Jari Häkkinen
Added Tab2MageImport branch

Nov 19, 2007:

2:56 PM Changeset [482] by dominic
adding missing importer.java
2:54 PM Changeset [481] by dominic
removed importer

Nov 16, 2007:

11:45 AM uk.ac.ebi.Tab2MageExporter edited by basepluginswiki
(diff)
11:44 AM uk.ac.ebi.AnnotationTypeCvImporter edited by basepluginswiki
(diff)
11:41 AM uk.ac.ebi.AffyArrayDesignBatchImporter edited by basepluginswiki
(diff)
11:36 AM Ticket #77 (Update information about webservice) created by Johan Enell
The web service system in BASE has changed and therefore the therefore …
11:32 AM Changeset [480] by dominic
updated ebi-plugin-utils jar
11:31 AM Changeset [479] by dominic
updated helper and zipunpacker for the ebi-utils jar
11:31 AM Changeset [478] by dominic
updated helper and zipunpacker for the ebi-utils jar

Nov 12, 2007:

6:59 PM Changeset [477] by dominic
added newly changed code.
6:59 PM Changeset [476] by dominic
added newly changed code.
6:55 PM Changeset [475] by dominic
removed folder
6:49 PM Changeset [474] by dominic
removed folder
6:47 PM Changeset [473] by dominic
added newly changed code. This source code is not in sycn with the …
5:50 PM Changeset [472] by dominic
added newly changed code. This source code is not in sycn with the …
5:49 PM Changeset [471] by dominic
added newly changed code. This source code is not in sycn with the …
5:49 PM Changeset [470] by dominic
added newly changed code. This source code is not in sycn with the …
5:48 PM Changeset [469] by dominic
added newly changed code. This source code is not in sycn with the …
5:47 PM Changeset [468] by dominic
added newly changed code. This source code is not in sycn with the …
5:46 PM Changeset [467] by dominic
added newly changed code. This source code is not in sycn with the …
10:43 AM Changeset [466] by dominic
new build file
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