Timeline



Nov 30, 2008:

12:46 AM Changeset [841] by Peter Johansson
avoid setting CPPFLAGS and friends in configure.ac and updating …

Nov 29, 2008:

10:23 PM Changeset [840] by Peter Johansson
added ACTION-IF-NOT-FOUND in AC_SEARCH_LIBS, in other words, configure …
10:12 PM Changeset [839] by Peter Johansson
removing warning - use C++ macro not C
2:28 AM Changeset [838] by Peter Johansson
typo

Nov 28, 2008:

8:12 PM Changeset [837] by Peter Johansson
removing annoying Automake warning that %-style pattern rules are a …
6:27 PM Changeset [836] by Peter Johansson
refs #63. Fixed vpath issues in test so make distcheck no works in …
6:03 PM Ticket #149 (Error: The query has already been executed (Illumina detection P-value ...) closed by Jari Häkkinen
invalid: I think this error has something to do with a mix of Illumina package …
5:55 PM Changeset [835] by Jari Häkkinen
Since changeset:834 there is no need to check for sed
4:36 PM Changeset [834] by Peter Johansson
Triggered by [826]. There were some problems with the Makefile.am, so …
2:15 PM Changeset [833] by Nicklas Nordborg
Fixes #150: Fix layout of DetectionPValue.java
2:15 PM Ticket #150 (Fix layout of DetectionPValue.java) closed by Nicklas Nordborg
fixed: (In [833]) Fixes #150: Fix layout of DetectionPValue.java
2:04 PM Ticket #151 (Use two queries instead of one in DetectionPValue.run() method) created by Nicklas Nordborg
The plug-in uses a single query instance to get data from …
1:58 PM Ticket #150 (Fix layout of DetectionPValue.java) created by Nicklas Nordborg
The layout in the file is a mess and seems to not follow any known …
1:36 PM Ticket #149 (Error: The query has already been executed (Illumina detection P-value ...) created by base
When trying to run plugin 'Illumina detection P-value calculation' I …

Nov 27, 2008:

11:32 PM Changeset [832] by Jari Häkkinen
Resetting svndigest:ignore property, testing of svndigest stats …
11:22 PM Changeset [831] by Jari Häkkinen
Removed bindir and cleaned up indentation.
10:53 PM Changeset [830] by Jari Häkkinen
Deleting svndigest:ignore property to test svndigest stats counting.
9:44 PM Changeset [829] by Jari Häkkinen
Setting svndigest:ignore on copies of trunks to avoid multiple counting.
9:30 PM Ticket #54 (update README) closed by Jari Häkkinen
fixed: (In [828]) Fixes #54
9:30 PM Changeset [828] by Jari Häkkinen
Fixes #54
8:35 PM Ticket #55 (update ChangeLog) closed by Jari Häkkinen
fixed
4:03 PM PluginDownload edited by Jari Häkkinen
(diff)
4:02 PM PluginDownload edited by Jari Häkkinen
Moved WeNNI into 1.2 plug-in table. (diff)
12:39 AM Changeset [827] by Jari Häkkinen
Added check for SED and some more changelog entries.
12:32 AM Changeset [826] by Jari Häkkinen
Fixes #148.
12:32 AM Ticket #148 (BASE1 configuration: execname should be set automatically during build) closed by Jari Häkkinen
fixed: (In [826]) Fixes #148.

Nov 26, 2008:

11:42 PM Changeset [825] by Jari Häkkinen
Fixes #146.
11:42 PM Ticket #146 (Change references to lev.thep.lu.se to something more appropriate) closed by Jari Häkkinen
fixed: (In [825]) Fixes #146.
11:17 PM Ticket #145 (GPL3 for WeNNI) closed by Jari Häkkinen
fixed: (In [824]) Fixes #145.
11:17 PM Changeset [824] by Jari Häkkinen
Fixes #145.
5:43 PM se.lu.thep.WeNNI edited by Peter Johansson
fixing the query syntax (diff)
4:38 PM se.lu.thep.WeNNI edited by Jari Häkkinen
Updated the TODO list (diff)
4:28 PM Ticket #52 (Add educational material and use cases.) closed by Jari Häkkinen
wontfix
4:27 PM Ticket #148 (BASE1 configuration: execname should be set automatically during build) created by Jari Häkkinen
As it is now a default name is used. basedir or plugin dir shuold be …
4:25 PM Ticket #64 (configure does not find basefile.h) closed by Jari Häkkinen
fixed: Fixed in changeset:821
4:23 PM Changeset [823] by Jari Häkkinen
Addresses #53 and fixes #60.
4:23 PM Ticket #60 (explain how to run wenni (base1 version) against a base_devkit) closed by Jari Häkkinen
fixed: (In [823]) Addresses #53 and fixes #60.
4:20 PM Changeset [822] by Jari Häkkinen
Updated change information and default installation paths

Nov 25, 2008:

5:38 PM Changeset [821] by Jari Häkkinen
Build of stand-alone and base1 modes work. base2 still to be finalized.
5:29 PM Changeset [820] by Jari Häkkinen
Added note saying that repository checkout requires ./bootstrap.

Nov 24, 2008:

10:56 AM Changeset [819] by Jari Häkkinen
Changed u_int to unsigned int to make code pass compilation on my Mac …

Nov 23, 2008:

9:45 PM Ticket #147 (WeNNI for BASE2 should support the automatic plug-in installation ...) created by Jari Häkkinen
8:46 PM Ticket #146 (Change references to lev.thep.lu.se to something more appropriate) created by Jari Häkkinen
8:45 PM Ticket #145 (GPL3 for WeNNI) created by Jari Häkkinen

Nov 21, 2008:

9:20 PM Changeset [818] by Jari Häkkinen
First commit of the AbstractRunBinaryPlugin? class. Still very …
9:17 PM Changeset [817] by Jari Häkkinen
Fixing typo.
9:24 AM Ticket #144 (R plug-in framework) created by Jari Häkkinen
A framework to support running R script should be created. This would …

Nov 19, 2008:

3:50 PM Changeset [816] by Martin Svensson
References #143 Removed unnecessary comments.
3:49 PM Changeset [815] by Martin Svensson
Fixes #143 Illumina plug-in package installer requests wrong permissions
3:49 PM Ticket #143 (Illumina plug-in package installer requests wrong permissions) closed by Martin Svensson
fixed: (In [815]) Fixes #143 Illumina plug-in package installer requests …
2:22 PM Ticket #143 (Illumina plug-in package installer requests wrong permissions) created by Martin Svensson
If only using the permissions requested by the plug-in, the jobs will …
11:08 AM Changeset [814] by Nicklas Nordborg
References #142. Removed problematic character. For historical reasons …
9:37 AM Changeset [813] by Martin Svensson
Fixes #142 Illumina installer plugin cannot be installed in some cases
9:37 AM Ticket #142 (Illumina installer plugin cannot be installed in some cases) closed by Martin Svensson
fixed: (In [813]) Fixes #142 Illumina installer plugin cannot be installed in …
8:22 AM Ticket #142 (Illumina installer plugin cannot be installed in some cases) created by Martin Svensson
Installing Illumina plugin installer fails when either doing it …

Nov 12, 2008:

5:07 PM SubversionCheckout edited by Peter Johansson
(diff)
8:42 AM Changeset [812] by Jari Häkkinen
Creating a new package.

Nov 11, 2008:

9:18 AM Ticket #141 (Rank invariant should not support configurations) closed by Martin Svensson
fixed: (In [811]) Fixes #141 Rank invariant should not support …
9:18 AM Changeset [811] by Martin Svensson
Fixes #141 Rank invariant should not support configurations. The …
9:04 AM Ticket #141 (Rank invariant should not support configurations) created by Martin Svensson
The rank-invariant plug-in does not override the …

Nov 10, 2008:

1:18 PM net.sf.basedb.mev edited by Nicklas Nordborg
Added information about required BASE version to download table (diff)
1:17 PM net.sf.basedb.ftp edited by Nicklas Nordborg
Added information about required BASE version to download table (diff)
1:16 PM net.sf.basedb.examples.webservices edited by Nicklas Nordborg
Added information about required BASE version to download table (diff)
1:16 PM net.sf.basedb.examples.plugins edited by Nicklas Nordborg
Added information about required BASE version to download table (diff)
1:15 PM net.sf.basedb.examplecode edited by Nicklas Nordborg
Added information about required BASE version to download table (diff)
1:13 PM net.sf.basedb.illumina edited by Nicklas Nordborg
Added information about required BASE version to download table (diff)
8:50 AM se.lu.onk.BAFsegmentation edited by markus
(diff)
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