Timeline



Mar 3, 2009:

1:37 PM net.sf.basedb.illumina edited by Jari Häkkinen
Added links to Illumina docs. (diff)

Feb 27, 2009:

2:07 PM Changeset [984] by Jari Häkkinen
Added support to write to stdin of underlying binary ... added missing …
2:06 PM Changeset [983] by Jari Häkkinen
Added support to write to stdin of underlying binary.
12:33 PM Changeset [982] by Nicklas Nordborg
References #178: The MeV launcher should use attached file instead of …
11:16 AM Changeset [981] by Martin Svensson
Changed requirements to version 2.9 of BASE both in documentation and …
11:12 AM Changeset [980] by Nicklas Nordborg
Added license file from MeV.
10:30 AM Changeset [979] by Jari Häkkinen
2.9 BASE core API required since changeset:975
10:03 AM net.sf.basedb.mev edited by Nicklas Nordborg
(diff)
9:45 AM Changeset [978] by Nicklas Nordborg
Fixes #179: Add user-configurable option for JVM max memory
9:45 AM Ticket #179 (Add user-configurable option for JVM max memory) closed by Nicklas Nordborg
fixed: (In [978]) Fixes #179: Add user-configurable option for JVM max memory

Feb 26, 2009:

7:22 PM Ticket #179 (Add user-configurable option for JVM max memory) created by Nicklas Nordborg
Currently, this is hard-coded into the generated JNLP file to 512 MB. …
2:05 PM Changeset [977] by Martin Svensson
References #119 Corrected the calculation of relative rank between …
1:41 PM Changeset [976] by Nicklas Nordborg
References #162: Upgrade to MeV 4. This seems to work now. I'll keep …
12:13 PM Changeset [975] by Martin Svensson
References #119 Some changes in the calculation-part. The plug-in runs …
10:48 AM Changeset [974] by Nicklas Nordborg
Fixes #178: The MeV launcher should use attached file instead of …
10:48 AM Ticket #178 (The MeV launcher should use attached file instead of running ...) closed by Nicklas Nordborg
fixed: (In [974]) Fixes #178: The MeV launcher should use attached file …

Feb 25, 2009:

4:16 PM Changeset [973] by Jari Häkkinen
Addresses #118. Required yat version is 0.5 or later
3:59 PM Changeset [972] by Jari Häkkinen
Addresses #118. Load of java wrapper works but manual install of …
1:45 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) created by Nicklas Nordborg
This is primarily a performance requirement. It can take a lot of time …
1:21 PM Changeset [971] by Martin Svensson
Added library-files to the ignore-list
9:43 AM Changeset [970] by Martin Svensson
Preparing for future release Illumina package v1.4
9:40 AM Milestone Illumina package v1.3 completed
See Illumina plug-ins package for BASE
9:39 AM Ticket #173 (Remove the float to integer conversions in beadstudio2ibs.pl when ...) closed by Martin Svensson
fixed: Wiki page is now updated.
9:36 AM net.sf.basedb.illumina edited by Martin Svensson
Releasing Illumina package 1.3 (diff)
9:14 AM illumina-plugins-1.3.tar.gz attached to net.sf.basedb.illumina by Martin Svensson
Releasing Illumina package 1.3
9:12 AM Changeset [969] by Martin Svensson
Tagging release 1.3
9:07 AM Changeset [968] by Martin Svensson
Preparing release 1.3

Feb 23, 2009:

3:16 PM Changeset [967] by Martin Svensson
References #119 The plug-in is mostly ready for testing

Feb 18, 2009:

3:13 PM Changeset [966] by Martin Svensson
References #119 Part of the normalization algorithm is implemented
8:55 AM Changeset [965] by Jari Häkkinen
Corrected flags summary output

Feb 17, 2009:

8:56 AM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)

Feb 16, 2009:

10:21 PM Changeset [964] by Jari Häkkinen
Added support to add qQN source to the normalizer package.
9:33 PM Changeset [963] by Jari Häkkinen
Improved configure.ac and added option to disable check on required libs.
9:19 PM Changeset [962] by Jari Häkkinen
Added missing include statement.

Feb 13, 2009:

12:30 AM Changeset [961] by Jari Häkkinen
Refs #118 and #161. PluginUtilities? download support. Added distclean …

Feb 12, 2009:

3:44 PM net.sf.basedb.normalizers edited by Peter Johansson
corrected query syntax -- see wiki:TracQuery#UsingTracLinks details (diff)
2:59 PM net.sf.basedb.normalizers edited by Jari Häkkinen
Fixed order in ticket query (diff)
2:46 PM Changeset [960] by Jari Häkkinen
Refs #118. Changes suggested by the yat developer team.

Feb 11, 2009:

8:51 AM Changeset [959] by Martin Svensson
Fixes #164 Improve documentation on how to upgrade the illumina …
8:51 AM Ticket #164 (Improve documentation on how to upgrade the illumina plug-in package) closed by Martin Svensson
fixed: (In [959]) Fixes #164 Improve documentation on how to upgrade the …

Feb 10, 2009:

10:53 AM Changeset [958] by Martin Svensson
Fixes #177 Add information about how to upgrade the normalization package.
10:53 AM Ticket #177 (Add information about how to upgrade the normalization package.) closed by Martin Svensson
fixed: (In [958]) Fixes #177 Add information about how to upgrade the …

Feb 9, 2009:

8:29 AM Changeset [957] by Nicklas Nordborg
Fixes #175: Update the ant script to include contrib directory when …
8:29 AM Ticket #175 (Update the ant script to include contrib directory when creating package.) closed by Nicklas Nordborg
fixed: (In [957]) Fixes #175: Update the ant script to include contrib …

Feb 8, 2009:

10:36 PM Changeset [956] by Jari Häkkinen
Removed stray character in configure.ac
10:18 PM Changeset [955] by Jari Häkkinen
Refs #118. Changes suggested by the yat developer team.
10:06 PM Changeset [954] by Jari Häkkinen
Refs #118. Changes suggested by the yat developer team.
10:02 PM Changeset [953] by Jari Häkkinen
Refs #118. Changes suggested by the yat developer team.

Feb 6, 2009:

11:58 AM se.lu.onk.BAFsegmentation edited by markus
(diff)
11:55 AM se.lu.onk.BAFsegmentation edited by markus
(diff)
10:47 AM Changeset [952] by Jari Häkkinen
Addresses #118. Added underlying C++ binary for the qQuantile.
10:10 AM Ticket #177 (Add information about how to upgrade the normalization package.) created by Jari Häkkinen
Explicitly state how an upgrade of the package is performed. If it is …
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