Timeline
May 11, 2009:
- 1:23 PM Changeset [1061] by
- References #214: Move TDMS export to this extension The new exporter …
- 1:06 PM Ticket #195 (net.sf.basedb.normalizers: Normalizers should ask user for how to ...) closed by
- fixed: (In [1060]) Fixes #195 Normalizers should ask user for how to …
- 1:06 PM Changeset [1060] by
- Fixes #195 Normalizers should ask user for how to calculate averages
- 12:36 PM Ticket #214 (Move TDMS export to this extension) created by
-
The
BioAssaySetExporteris going through refactoring as described by …
May 8, 2009:
- 3:02 PM Changeset [1059] by
- Use functionality already in yat.
- 12:24 PM Changeset [1058] by
- The normalizer package now depends in PluginUtilites? version 0.1
- 12:17 PM Changeset [1057] by
- Tagging version 0.1 of PluginUtilities?
- 12:15 PM Changeset [1056] by
- Preparing release 0.1 of PluginUtilities? package.
May 7, 2009:
- 12:43 AM Changeset [1055] by
- Reverting previuos commit on configure.ac, still requiring 0.5.3
- 12:41 AM Changeset [1054] by
- Cleaned up iterator usage in qQN.cc
- 12:30 AM Changeset [1053] by
- Addresses #208. Fixing typos.
- 12:28 AM Changeset [1052] by
- Fixes #208. Reverted changeset:1045 and added requirement on yat 0.5.3.
- 12:28 AM Ticket #208 (Revert changeset:1045 when yat bug ...) closed by
- fixed: (In [1052]) Fixes #208. Reverted changeset:1045 and added requirement …
May 6, 2009:
- 1:15 PM Changeset [1051] by
- Updated documentation on QuantileNormalization?.
- 11:11 AM Changeset [1050] by
- Addresses #118. Non-logged input values are expected, geometric mean …
- 9:20 AM Changeset [1049] by
- Addresses #206. Last commit destroyed nan fixing in changeset:1045 for …
May 4, 2009:
- 11:46 AM Changeset [1048] by
- Fixes #213: Cannot save MeV options It was caused by #203 and never …
- 11:46 AM Ticket #213 (Cannot save MeV options) closed by
- fixed: (In [1048]) Fixes #213: Cannot save MeV options It was caused by #203 …
Apr 30, 2009:
- 11:47 AM Ticket #213 (Cannot save MeV options) created by
- It is not possible to save options for MeV. The options dialog is …
Apr 28, 2009:
- 8:12 AM Ticket #212 (Add support for exporting CGH data to MeV) created by
- This is supposed to be straightforward the format is well-defined.
Apr 27, 2009:
- 4:24 PM Ticket #211 (Request: R/G quantile normalization) created by
- Copied from the BASE users mailing list (April 27, 2009): Yannick …
- 3:32 PM Ticket #210 (net.sf.basedb.normalizers: Add proper 2-channel support to ...) created by
- That is, keep our old favourite A \propto ln(ch1*ch2) the same value …
- 3:24 PM Changeset [1047] by
- Fixes #206. Missing values in reference now works. Each probe with no …
- 3:24 PM Ticket #206 (net.sf.basedb.normalizers: Make qQuantileNormalization handle missing ...) closed by
- fixed: (In [1047]) Fixes #206. Missing values in reference now works. Each …
- 1:14 PM Changeset [1046] by
- Debugging should be turned if in repository code.
- 11:30 AM Ticket #209 (Export of data to data repositories such as GEO and ArrayExpress) created by
- We should create an export plug-in/extesion for the GEO repository, …
Apr 24, 2009:
- 10:54 PM Ticket #208 (Revert changeset:1045 when yat bug ...) created by
- Revert changeset:1045 when yat bug …
- 10:52 PM Changeset [1045] by
- Missing values now works with the implemented fix to avoid a bug in …
Apr 23, 2009:
- 7:09 PM Changeset [1044] by
- Addresses #118 and #206. If no assay data is given use the average of …
- 6:55 PM Changeset [1043] by
- Addresses #118 and #206. This code produces the same result as the …
- 6:31 PM uk.ac.ebi.Tab2MageExporter edited by
- Fixed broken links. (diff)
- 10:11 AM Ticket #207 (Illumina DASL arrays) created by
- Make sure that DASL arrays can be used in BASE. Detection p-value …
Apr 20, 2009:
- 10:41 PM Changeset [1042] by
- Changed qqn package name.
- 10:37 PM Changeset [1041] by
- Changed qqn package name.
- 9:56 PM Ticket #206 (net.sf.basedb.normalizers: Make qQuantileNormalization handle missing ...) created by
- 9:44 PM Changeset [1040] by
- Use getCurrentBioAssaySet in configuration phase.
Apr 16, 2009:
- 11:59 AM Ticket #190 (net.sf.basedb.normalizers: Add target that tries to build qQN if requested) closed by
- fixed: (In [1039]) Fixes #190. target c++ added.
- 11:59 AM Changeset [1039] by
- Fixes #190. target c++ added.
Apr 14, 2009:
- 3:56 PM Ticket #205 (Change link README_PluginDetails to point to tags at next release) created by
- The information in …
- 3:53 PM net.sf.basedb.illumina edited by
- Added link to detail information of the detection P-value plug-in. (diff)
- 3:47 PM Changeset [1038] by
- Added some detailed information on detection P-calue plug-in
- 3:42 PM Ticket #204 (Add option to include all available negative controls in detection ...) created by
- Add an user selectable option to use all in raw data available …
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