Timeline
Jun 5, 2014:
- 4:06 PM Milestone LabEnv v1.1 completed
- An update of the LabEnv extension to BASE, a package allowing storage …
- 4:04 PM Ticket #592 (Lab environment extension improved report routines) closed by
- fixed: Ticket closed as a the lab environment extension has been updated with …
- 3:42 PM Changeset [2499] by
- References #595: Confirm alignment Display PT_READS in the …
- 3:41 PM Changeset [2498] by
- References #548: Register Demux and Merge as ended Display PT_READS …
- 3:41 PM Changeset [2497] by
- References #547: Start Demux and Merge Added trimmomatic to the …
- 3:26 PM Changeset [2496] by
- Adding svn properties
- 3:24 PM Changeset [2495] by
- Adding wrapper for calling trimmomatic. Includes default settings for …
- 3:02 PM Changeset [2494] by
- unwanted
- 2:55 PM Changeset [2493] by
- Checking out tagged release LabEnv 1.1
- 2:48 PM net.sf.basedb.labenv edited by
- LabEnv info page updated with data for version 1.1. (diff)
- 2:14 PM PluginDownload edited by
- (diff)
- 2:14 PM PluginDownload edited by
- Updated note about web service support. (diff)
- 2:10 PM net.sf.basedb.examples.webservices edited by
- Updated note about web service support. (diff)
- 2:09 PM Changeset [2492] by
- LabEnv? tagged release 1.1
- 1:55 PM Changeset [2491] by
- Refs #592. Lab environment extension updated by setting version number …
- 1:43 PM Changeset [2490] by
-
Refs #592. Configuration file
META-INF/extensions.xmlupdated by … - 1:32 PM Changeset [2489] by
- Refs #592. Lab environment extension updated in versions of external …
- 1:29 PM Ticket #602 (Focus fields on the YubiKey tab) closed by
- fixed: (In [2488]) Fixes #602: Focus fields on the YubiKey? tab
- 1:29 PM Changeset [2488] by
- Fixes #602: Focus fields on the YubiKey? tab
- 1:26 PM Ticket #602 (Focus fields on the YubiKey tab) created by
- When switching to the YubiKey tab in the edit user dialog it would be …
- 1:22 PM Ticket #601 (NullPointerException when trying to assign a YubiKey to a new user) closed by
- fixed: (In [2487]) Fixes #601: NullPointerException? when trying to assign a …
- 1:22 PM Changeset [2487] by
- Fixes #601: NullPointerException? when trying to assign a YubiKey? to a …
- 11:21 AM Changeset [2486] by
- Refs #592. Lab environment extension updated in JSP files by removing …
- 11:02 AM Ticket #601 (NullPointerException when trying to assign a YubiKey to a new user) created by
- Start creating a new user and then switch to the YubiKey tab. Instead …
- 8:56 AM Ticket #599 (YubiKey package is missing yubikey-extended-properties.xml) closed by
- fixed: (In [2485]) Fixes #599: YubiKey? package is missing …
- 8:56 AM Changeset [2485] by
- Fixes #599: YubiKey? package is missing yubikey-extended-properties.xml
- 8:54 AM Ticket #600 (Installation instructions for YubiKey extensions is not clear) closed by
- fixed
- 8:54 AM net.sf.basedb.yubikey/install edited by
- Fixes #600 (diff)
- 8:49 AM Ticket #600 (Installation instructions for YubiKey extensions is not clear) created by
- Step 3: If this is a FIRST-TIME INSTALLATION go through the step …
- 8:10 AM net.sf.basedb.yubikey/install edited by
- Add note about missing yubikey-extended-properties.xml (diff)
- 8:07 AM Ticket #599 (YubiKey package is missing yubikey-extended-properties.xml) created by
- Workaround is to download this file from the subversion repository: …
Jun 4, 2014:
- 12:19 PM PluginDownload edited by
- Updating information about new releases (diff)
- 12:16 PM Changeset [2484] by
- Preparing for future release YubiKey? 1.1
- 12:16 PM Milestone YubiKey v1.0 completed
- Implementing an authentication module for YubiKey. …
- 12:15 PM net.sf.basedb.yubikey edited by
- Released YubiKey? 1.0 (diff)
- 12:07 PM Ticket #580 (Authenticate users using YubiKey sticks) closed by
- fixed
- 12:07 PM Changeset [2483] by
- Tagging YubiKey? 1.0
- 12:06 PM Changeset [2482] by
- Preparing to release Yubikey 1.0
- 12:00 PM Changeset [2481] by
- Refs #592. Lab environment extension updated for displaying lab …
- 11:45 AM Changeset [2480] by
- Preparing for future release print package 1.2
- 11:44 AM Milestone Print package v1.1 completed
- See Print package extension page for more …
- 11:43 AM net.sf.basedb.print edited by
- Released print package 1.1 (diff)
- 11:42 AM Changeset [2479] by
- Tagging print package 1.1
- 11:41 AM Changeset [2478] by
- Preparing to release print package 1.1
- 11:38 AM Changeset [2477] by
- Preparing for future release MeV launcher 1.12
- 11:34 AM Milestone MeV Launcher 1.11 completed
- For more information see the [wiki:net.sf.basedb.mev MEV Launcher …
- 11:29 AM net.sf.basedb.mev edited by
- Released MeV Launcher 1.11 (diff)
- 11:26 AM Changeset [2476] by
- Tagging Mev launcher 1.11
- 11:25 AM Changeset [2475] by
- Preparing to release MEV launvher 1.11
- 11:21 AM Changeset [2474] by
- Refs #592. Lab environment extension updated in XML file …
- 11:20 AM Changeset [2473] by
- Preparing for future release Ftp server 1.4
- 11:19 AM Milestone FTP Server v1.3 completed
- For more information see the [wiki:net.sf.basedb.ftp FTP Server …
- 11:18 AM net.sf.basedb.ftp edited by
- Released Ftp server 1.3 (diff)
- 11:16 AM Changeset [2472] by
- Tagging Ftp server 1.3
- 11:15 AM Changeset [2471] by
- Preparing to release Ftp server 1.3
- 11:13 AM Changeset [2470] by
- Preparing for future release example code 1.7
- 11:12 AM Milestone Example code v1.6 completed
- For more information see [wiki:net.sf.basedb.examplecode Example code …
- 11:11 AM net.sf.basedb.examplecode edited by
- Released exemple code 1.6 (diff)
- 10:03 AM Changeset [2469] by
- Tagging example code 1.6
- 10:01 AM Changeset [2468] by
- Preparing to release example code 1.6
Jun 3, 2014:
- 8:22 AM Changeset [2467] by
- Refs #592. Lab environment extension updated for displaying lab …
Jun 2, 2014:
- 4:16 PM Changeset [2466] by
- Refs #592. Lab environment extension updated to report an alarm for …
- 1:04 PM Changeset [2465] by
- Refs #592. Lab environment extension updated for weekly and overview …
- 10:02 AM Changeset [2464] by
- References #547: Start Demux and Merge Do not set TILE_LIMIT for …
- 9:59 AM Changeset [2463] by
- Refs #592. Lab environment extension updated to support display of lab …
May 28, 2014:
- 7:24 AM Changeset [2462] by
- Refs #592. Lab environment extension updated with a copy of the Reggie …
May 26, 2014:
- 1:41 PM Ticket #598 (Pooling wizard can't show flag and warning at the same time) closed by
- fixed: (In [2461]) Fixes #598: Pooling wizard can't show flag and warning at …
- 1:41 PM Changeset [2461] by
- Fixes #598: Pooling wizard can't show flag and warning at the same …
- 1:09 PM Ticket #598 (Pooling wizard can't show flag and warning at the same time) created by
- Libraries that get a warning due to low concentration or high adapter …
- 9:32 AM Changeset [2460] by
- References #593: Start masking and alignment Improved error handling …
- 9:08 AM Changeset [2459] by
- References #548: Register Demux and Merge as ended Exit script if the …
May 23, 2014:
- 1:44 PM Changeset [2458] by
- References #548: Register Demux and Merge as ended Display failed …
- 1:21 PM Changeset [2457] by
- References #547: Start Demux and Merge Get rid of problematic …
- 1:11 PM Changeset [2456] by
- References #547: Start Demux and Merge Trim whitespace values from …
- 1:08 PM Changeset [2455] by
- References #547: Start Demux and Merge Avoid 'find' command to choke …
- 11:28 AM Changeset [2454] by
- Merging Reggie 2.15.2 to the trunk.
- 10:56 AM Milestone Reggie v2.15.2 completed
- Adapter peak information in library registration and pooling wizards. …
- 10:54 AM net.sf.basedb.reggie edited by
- Released Reggie 2.15.2 (diff)
- 10:53 AM Changeset [2453] by
- Tagging Reggie 2.15.2
- 10:52 AM Changeset [2452] by
- Preparing to release Reggie 2.15.2
- 10:50 AM net.sf.basedb.reggie/notes2152 created by
- Adding updated notes for Reggie 2.15.2
- 10:44 AM Ticket #596 (Import adapter peak information when registering libraries) closed by
- fixed
- 10:44 AM Ticket #597 (Display adapter peak fraction in the pooling wizard) closed by
- fixed
- 9:54 AM Changeset [2451] by
- References #597: Display adapter peak fraction in the pooling wizard …
- 9:43 AM Changeset [2450] by
- References #597: Display adapter peak fraction in the pooling wizard …
May 22, 2014:
- 4:05 PM Changeset [2449] by
- References #596: Import adapter peak information when registering …
- 2:08 PM Changeset [2448] by
- References #596: Import adapter peak information when registering …
- 12:59 PM Changeset [2447] by
- References #596: Import adapter peak information when registering …
- 12:34 PM Changeset [2446] by
- References #547: Start Demux and Merge Adding 'rm <tmp-folder>' back …
- 12:31 PM Ticket #597 (Display adapter peak fraction in the pooling wizard) created by
- This is related to #596. The pooling wizard should display the …
- 12:00 PM Ticket #596 (Import adapter peak information when registering libraries) created by
- The library registration wizard currently import values for the …
- 11:36 AM Changeset [2445] by
- References #547: Start Demux and Merge Use 'getFile' instead of …
- 10:29 AM Changeset [2444] by
- Refs #592. Lab environment extension updated to hopefully make e-mail …
- 10:27 AM Changeset [2443] by
- References #547: Start Demux and Merge Generate .gz compressed files …
- 8:48 AM Changeset [2442] by
- Check enironment variable PicardMemory? for amount of memory to give to …
May 20, 2014:
- 11:43 AM Changeset [2441] by
- References #547: Start Demux and Merge * Do not start multiple demux …
May 19, 2014:
- 3:37 PM Changeset [2440] by
- Refs #592. Lab environment extension updated by associating main "Lab …
- 1:45 PM Changeset [2439] by
- Refs #592. Lab environment extension updated in JSP files to have more …
- 1:15 PM Changeset [2438] by
- References #548: Register Demux and Merge as ended Remove job folder …
- 12:55 PM Changeset [2437] by
- References #548: Register Demux and Merge as ended Display demux …
- 11:00 AM Changeset [2436] by
- References #547: Start Demux and Merge Do not skip last base in …
- 10:54 AM Changeset [2435] by
- References #547: Start Demux and Merge Saving demultiplex_metrics …
- 9:11 AM Changeset [2434] by
- References #547: Start Demux and Merge Adding PF_NNNN_PCT, …
May 16, 2014:
- 4:39 PM Changeset [2433] by
- Refs #592. Lab environment extension updated in servlet to reduce the …
- 4:31 PM Changeset [2432] by
- Refs #592. Lab environment extension updated with first version of …
- 12:31 PM Changeset [2431] by
- Refs #592. Lab environment extension updated in servlet, in order to …
- 8:12 AM Changeset [2430] by
- Switched from illumina2bam_wrapper to picard for demultiplexing. …
- 8:10 AM Changeset [2429] by
- References #547: Start Demux and Merge Switched from …
- 7:28 AM Changeset [2428] by
- Refs #592. Lab environment extension updated in header title for …
May 15, 2014:
- 4:45 PM Changeset [2427] by
- Refs #592. Lab environment extension updated in layout of alarm table: …
- 11:30 AM Changeset [2426] by
- Refs #592. Lab environment extension updated in alarm text layout: …
- 7:39 AM Changeset [2425] by
- Refs #592. Lab environment extension updated in alarm infra-structure …
May 14, 2014:
- 4:38 PM Changeset [2424] by
- Refs #592. Lab environment extension updated in alarm infra-structure …
- 8:47 AM Changeset [2423] by
- Refs #592. Lab environment extension updated in header title for …
May 13, 2014:
- 3:40 PM Changeset [2422] by
- References #547: Start Demux and Merge Export barcode files needed by …
- 2:43 PM Changeset [2421] by
- Renamed the 'filtered' step to 'masked'. See …
- 2:41 PM Changeset [2420] by
-
References #533, #547, #548, #593, #595. Renamed
FilteredSequences… - 8:37 AM Changeset [2419] by
- Refs #592. Lab environment extension updated to check permission to …
May 12, 2014:
- 3:58 PM Changeset [2418] by
- Refs #592. Lab environment extension updated to only use a fixed …
- 8:13 AM Changeset [2417] by
- References #595: Confirm alignment Saved files are attached to the …
May 9, 2014:
- 3:01 PM Changeset [2416] by
- Refs #592. Lab environment extension updated in code formatting: 1. …
- 2:17 PM Changeset [2415] by
- Refs #592. Lab environment extension updated with lab environment …
- 1:24 PM Changeset [2414] by
- References #593: Start filter and alignment Removed 'filter_' prefix …
- 1:23 PM Changeset [2413] by
- Remove 'filter_' prefix in the PE_filter script.
- 9:00 AM Changeset [2412] by
- Merged Reggie 2.15.1 to trunk.
- 8:19 AM Milestone Reggie v2.15.1 completed
- Bug fixes for Reggie 2.15 and changes for NextSeq support. See …
- 8:17 AM net.sf.basedb.reggie edited by
- (diff)
- 8:17 AM net.sf.basedb.reggie/notes215 edited by
- (diff)
- 8:16 AM net.sf.basedb.reggie edited by
- (diff)
- 8:14 AM net.sf.basedb.reggie/notes2151 created by
- 8:08 AM net.sf.basedb.reggie edited by
- Released Reggie 2.15.1 (diff)
- 8:06 AM Ticket #594 (Changes for NextSeq support) closed by
- fixed
- 8:05 AM Changeset [2411] by
- Tagging Reggie 2.15.1
- 8:04 AM Changeset [2410] by
- Preparing to release Reggie 2.15.1
- 8:02 AM Changeset [2409] by
- References #594: Changes for NextSeq? support Hide 'B' position when …
May 8, 2014:
- 3:49 PM Changeset [2408] by
- References #594: Changes for NextSeq? support * Added 'Lanes/flow …
- 10:56 AM Changeset [2407] by
- References #595: Confirm alignment Extended the file listing feature …
May 7, 2014:
- 12:39 PM Changeset [2406] by
- References #595: Confirm alignment Adding a function for listing and …
- 8:42 AM Changeset [2405] by
- Refs #592. Lab environment extension updated in class/file …
May 6, 2014:
- 1:59 PM Changeset [2404] by
- References #595: Confirm alignment First version of the wizard. It …
- 12:05 PM Changeset [2403] by
- Refs #592. Lab environment extension updated in class/file …
- 11:55 AM Changeset [2402] by
- Refs #592. Lab environment extension updated in field name and help …
- 11:37 AM Ticket #595 (Confirm alignment) created by
- Confirmation is needed after the filter/alignment step. The normal …
- 11:09 AM Changeset [2401] by
- Refs #592. Lab environment extension updated for displaying graphs of …
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