Timeline



Jan 10, 2020:

10:56 AM Changeset [5808] by Nicklas Nordborg
References #1216: Finalize the "Confirm MIPs demux" wizard The read …
8:18 AM Changeset [5807] by Nicklas Nordborg
References #1215: Include mutation signature analysis in the variant …

Jan 9, 2020:

11:54 AM Changeset [5806] by Nicklas Nordborg
References #1209: Add support for storing TMA specimen Display the …
9:49 AM Changeset [5805] by Nicklas Nordborg
References #1221: Display more information in the Variant summary …
9:17 AM Ticket #1221 (Display more information in the Variant summary dialog) created by Nicklas Nordborg
A dialog that displays some information about filtered variants was …

Jan 8, 2020:

11:28 AM Changeset [5804] by Nicklas Nordborg
References #1216: Finalize the "Confirm MIPs demux" wizard The MIPs …
11:26 AM Ticket #1220 (Auto-analyze in the MIPs pipeline should start the demux) closed by Nicklas Nordborg
fixed: In 5803: […]
11:26 AM Changeset [5803] by Nicklas Nordborg
Fixes #1220: Auto-analyze in the MIPs pipeline should start the demux

Jan 7, 2020:

1:20 PM Ticket #1220 (Auto-analyze in the MIPs pipeline should start the demux) created by Nicklas Nordborg
This has been temporarily disabled due to testing. It seems to be …

Dec 19, 2019:

2:16 PM Changeset [5802] by Nicklas Nordborg
References #1216: Finalize the "Confirm MIPs demux" wizard Number of …
2:03 PM Ticket #1219 (Start demux wizard for MIPs should be a separate wizard) closed by Nicklas Nordborg
fixed: In 5801: […]
2:03 PM Changeset [5801] by Nicklas Nordborg
Fixes #1219: Start demux wizard for MIPs should be a separate wizard
10:56 AM Ticket #1219 (Start demux wizard for MIPs should be a separate wizard) created by Nicklas Nordborg
The "Start demux" wizard is currently shared between the RNAseq and …
10:51 AM Changeset [5800] by Nicklas Nordborg
References #1216: Finalize the "Confirm MIPs demux" wizard Metrics …

Dec 18, 2019:

1:12 PM Changeset [5799] by Nicklas Nordborg
References #1209: Add support for storing TMA specimen Added …
11:34 AM Changeset [5798] by Nicklas Nordborg
References #1209: Add support for storing TMA specimen Added …
8:33 AM Changeset [5797] by Nicklas Nordborg
References #1216: Finalize the "Confirm MIPs demux" wizard Added some …
7:32 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) reopened by Nicklas Nordborg
I think we should add columns with Libplate+location and Barcode …

Dec 16, 2019:

2:35 PM Changeset [5796] by Nicklas Nordborg
References #1215: Include mutation signature analysis in the variant …
2:33 PM Changeset [5795] by Nicklas Nordborg
References #1215: Include mutation signature analysis in the variant …
12:44 PM Changeset [5794] by Nicklas Nordborg
References #1215: Include mutation signature analysis in the variant …
11:30 AM Changeset [5793] by Nicklas Nordborg
References #1215: Include mutation signature analysis in the variant …
9:03 AM Changeset [5792] by Nicklas Nordborg
References #1215: Include mutation signature analysis in the variant …
8:32 AM Ticket #1217 (DoNotUse flags and comments should be copied to new child items) closed by Nicklas Nordborg
fixed: In 5791: […]
8:32 AM Changeset [5791] by Nicklas Nordborg
Fixes #1217: DoNotUse? flags and comments should be copied to new child …

Dec 13, 2019:

2:26 PM Changeset [5790] by Nicklas Nordborg
References #1217: DoNotUse? flags and comments should be copied to new …
1:58 PM Changeset [5789] by Nicklas Nordborg
References #1217: DoNotUse? flags and comments should be copied to new …
11:49 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) closed by Nicklas Nordborg
fixed: In 5788: […]
11:49 AM Changeset [5788] by Nicklas Nordborg
Fixes #1216: Finalize the "Confirm MIPs demux" wizard The wizard now …
11:02 AM Changeset [5787] by Nicklas Nordborg
References #1216: Finalize the "Confirm MIPs demux" wizard Added the …
9:36 AM Ticket #1218 (Implement MIPs alignment) created by Nicklas Nordborg
The next step after demux in the MIPs pipeline is an alignment step. A …
9:33 AM Ticket #1217 (DoNotUse flags and comments should be copied to new child items) created by Nicklas Nordborg
In wizards with manual selection it is possible to select items with a …
9:26 AM Ticket #1216 (Finalize the "Confirm MIPs demux" wizard) created by Nicklas Nordborg
This wizard is full with TODO that are mostly related to not knowing …
9:23 AM Ticket #1214 (Add support for external specimen) closed by Nicklas Nordborg
fixed
9:22 AM Changeset [5786] by Nicklas Nordborg
References #1214: Add support for external specimen Fixes an issue …

Dec 12, 2019:

2:26 PM Changeset [5785] by Nicklas Nordborg
References #1214: Add support for external specimen When an external …
8:30 AM Changeset [5784] by Nicklas Nordborg
References #1214: Add support for external specimen Histology images …
8:08 AM Changeset [5783] by Nicklas Nordborg
References #1214: Add support for external specimen Display "External …

Dec 11, 2019:

4:00 PM Changeset [5782] by Nicklas Nordborg
References #1214: Add support for external specimen Changes to …
1:08 PM Ticket #1215 (Include mutation signature analysis in the variant calling pipeline) created by Nicklas Nordborg
A mutation signature can be calculated from the filtered variants VCF. …
12:53 PM Ticket #1214 (Add support for external specimen) created by Nicklas Nordborg
This would be similar to the current support for external RNA items …
12:34 PM Changeset [5781] by Nicklas Nordborg
References #1209: Add support for storing TMA specimen Added support …
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