Timeline



Apr 21, 2022:

1:27 PM Changeset [6692] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:02 AM Changeset [6691] by Nicklas Nordborg
Changes for future release Job scheduler extension 1.6
10:01 AM Milestone Job scheduler extension v1.5 completed
See the Job scheduler extension page for …
10:00 AM PluginDownload edited by Nicklas Nordborg
Released Job scheduler extension 1.5 (diff)
9:59 AM net.sf.basedb.opengrid edited by Nicklas Nordborg
Released Job scheduler extension 1.5 (diff)
9:56 AM opengrid-1.5.tar.gz attached to net.sf.basedb.opengrid by Nicklas Nordborg
Job scheduler 1.5
9:54 AM Changeset [6690] by Nicklas Nordborg
Tagging Job scheduler extension 1.5
9:53 AM Changeset [6689] by Nicklas Nordborg
Preparing to release Job scheduler extension 1.5
9:37 AM Changeset [6688] by Nicklas Nordborg
References #1369: Implement support for starting jobs without a queue …
9:33 AM Ticket #1375 (Changes that are needed or useful for running jobs inside a container) closed by Nicklas Nordborg
fixed
9:22 AM net.sf.basedb.opengrid/install edited by Nicklas Nordborg
Update documentation for Job scheduler 1.5 (diff)
9:13 AM Ticket #1369 (Implement support for starting jobs without a queue system) closed by Nicklas Nordborg
fixed
9:09 AM Changeset [6687] by Nicklas Nordborg
References #1384: Add a (increasing) delay when submitting multiple …
9:07 AM Changeset [6686] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Apr 20, 2022:

2:46 PM Changeset [6685] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
2:11 PM Ticket #1387 (Reload reggie-config.xml) closed by Nicklas Nordborg
fixed: In 6684: […]
2:11 PM Changeset [6684] by Nicklas Nordborg
Fixes #1387: Reload reggie-config.xml
1:19 PM Changeset [6683] by Nicklas Nordborg
References #1387: Reload reggie-config.xml Added a method …
1:14 PM Ticket #1387 (Reload reggie-config.xml) created by Nicklas Nordborg
This can currently be done via the web interface on the Open Grid …
11:15 AM Changeset [6682] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:47 AM Changeset [6681] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:09 AM Changeset [6680] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Apr 19, 2022:

1:18 PM Changeset [6679] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
8:09 AM Ticket #1386 (Remove the genseq_check_illumina_dir.pl program from the "Check data ...) closed by Nicklas Nordborg
fixed: In 6678: […]
8:09 AM Changeset [6678] by Nicklas Nordborg
Fixes #1386: Remove the genseq_check_illumina_dir.pl program from the …

Apr 14, 2022:

1:51 PM Ticket #1386 (Remove the genseq_check_illumina_dir.pl program from the "Check data ...) created by Nicklas Nordborg
We do not need this anymore and it will be a lot more complicated to …
1:18 PM Changeset [6677] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Apr 13, 2022:

9:04 AM Changeset [6676] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:02 AM Changeset [6675] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Apr 11, 2022:

11:35 AM Ticket #1385 (Add a (increasing) delay when submitting multiple jobs in a batch) closed by Nicklas Nordborg
fixed: In 6674: […]
11:35 AM Changeset [6674] by Nicklas Nordborg
Fixes #1385: Add a (increasing) delay when submitting multiple jobs in …
11:31 AM Ticket #1385 (Add a (increasing) delay when submitting multiple jobs in a batch) created by Nicklas Nordborg
This is related to #1384. For most situations the implementation in …
9:31 AM Changeset [6673] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:28 AM Ticket #1384 (Add a (increasing) delay when submitting multiple jobs in a batch) closed by Nicklas Nordborg
fixed: In 6672: […]
9:28 AM Changeset [6672] by Nicklas Nordborg
Fixes #1384: Add a (increasing) delay when submitting multiple jobs in …

Apr 8, 2022:

1:13 PM Ticket #1384 (Add a (increasing) delay when submitting multiple jobs in a batch) created by Nicklas Nordborg
When submitting multiple jobs at the same time and the cluster has a …
7:21 AM Ticket #1383 (Display number of FASTQ pairs waiting in the "Import gateway" on the ...) closed by Nicklas Nordborg
fixed: Fixed in [6671]

Apr 7, 2022:

9:04 AM Changeset [6671] by Nicklas Nordborg
8:57 AM Ticket #1383 (Display number of FASTQ pairs waiting in the "Import gateway" on the ...) created by Nicklas Nordborg
On the index page there is already a counter for the number of JSON …
8:23 AM Ticket #1382 (Batch toggle/set/clear checkboxes in secondary analysis confirmation ...) closed by Nicklas Nordborg
fixed: In 6670: […]
8:23 AM Changeset [6670] by Nicklas Nordborg
Fixes #1382: Batch toggle/set/clear checkboxes in secondary analysis …
7:28 AM Ticket #1382 (Batch toggle/set/clear checkboxes in secondary analysis confirmation ...) created by Nicklas Nordborg
The confirmation wizards in the secondary analysis typically have …

Apr 6, 2022:

10:00 AM Changeset [6669] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:52 AM Changeset [6668] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …

Apr 5, 2022:

9:41 AM Changeset [6667] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
9:36 AM Changeset [6666] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
9:33 AM Changeset [6665] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
9:00 AM Ticket #1381 (Manually confirming a variant call analysis doesn't add the raw ...) closed by Nicklas Nordborg
fixed: In 6664: […]
9:00 AM Changeset [6664] by Nicklas Nordborg
Fixes #1381: Manually confirming a variant call analysis doesn't add …
8:57 AM Ticket #1381 (Manually confirming a variant call analysis doesn't add the raw ...) created by Nicklas Nordborg
The next step after variant calling is to do targeted genotyping. This …

Apr 1, 2022:

3:34 PM Changeset [6663] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
11:50 AM Changeset [6662] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:58 AM Changeset [6661] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
10:47 AM Changeset [6660] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …
10:29 AM Changeset [6659] by Nicklas Nordborg
References #1375: Changes that are needed or useful for running jobs …

Mar 31, 2022:

7:26 AM Changeset [6658] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 30, 2022:

8:27 AM Changeset [6657] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 29, 2022:

8:50 AM Changeset [6656] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 24, 2022:

11:46 AM Changeset [6655] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 23, 2022:

1:15 PM Changeset [6654] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …
8:34 AM Changeset [6653] by Nicklas Nordborg
References #1374: Implement support for running jobs in a Singularity …

Mar 22, 2022:

12:48 PM Milestone Reggie v4.37.4 completed
Bug fixes and enhancements for Reggie 4.37.3. Revision Log: …
12:47 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.37.4 (diff)
12:47 PM reggie-4.37.4.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.37.4
12:45 PM Changeset [6652] by Nicklas Nordborg
Tagging Reggie 4.37.4
12:45 PM Changeset [6651] by Nicklas Nordborg
Preparing to relase Reggie 4.37.4
8:49 AM Ticket #1380 (The prepDE step in the StringTie analysis generate files with ...) closed by Nicklas Nordborg
fixed: In 6650: […]
8:49 AM Changeset [6650] by Nicklas Nordborg
Fixes #1380: The prepDE step in the StringTie? analysis generate files …
8:49 AM Ticket #1380 (The prepDE step in the StringTie analysis generate files with ...) created by Nicklas Nordborg
See #1266 for the introduction of prepDE in the StringTie pipeline. …
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