Changes between Version 85 and Version 86 of PluginDownload


Ignore:
Timestamp:
May 27, 2009, 3:56:42 PM (12 years ago)
Author:
Jari Häkkinen
Comment:

Fixed BASE 1.2 plug-in list

Legend:

Unmodified
Added
Removed
Modified
  • PluginDownload

    v85 v86  
    7373
    7474|| ''Name'' || ''Type'' || ''Version'' || ''BASE version'' || ''Comment'' ||
    75 ||  [wiki:se.lu.onk.BaseFile BaseFile] || Other || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz?format=raw 1.0] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Java utility package for reading the BASEFile format. Required for many se.lu.onk-series plug-ins. [[br]] Not tested with BASE 1.2.17+ but expected to work. ||
     75|| [wiki:se.lu.onk.BaseFile BaseFile] || Other || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz?format=raw 1.0] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.BaseFile/BaseFile-1.0.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Java utility package for reading the BASEFile format. Required for many se.lu.onk-series plug-ins. [[br]] Not tested with BASE 1.2.17+ but expected to work. ||
    7676|| [wiki:se.lu.onk.CGHDataDumper CGH Data Dumper] || Export || || 1.2.17+, 2.8 || Dumps bioassay sets in several formats, useful for non-CGH data as well. [[br]] Not tested with BASE 1.2.17+ but expected to work ||
    77 ||  [wiki:se.lu.onk.Center Median/mean centering] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
    78 ||  [wiki:se.lu.onk.MergeBioAssay Merge BioAssay] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
     77|| [wiki:se.lu.onk.Center Median/mean centering] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.Center/Center-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
     78|| [wiki:se.lu.onk.MergeBioAssay Merge BioAssay] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz?format=raw 2.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.MergeBioAssay/MergeBioAssay-2.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
     79|| [wiki:se.lu.onk.popLowess popLowess] || Normalization || || 1.2.17+ || ||
    7980|| [wiki:se.lu.onk.ReplicateError ReplicateError] || Filter || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.ReplicateError/ReplicateError-1.3.tgz?format=raw 1.3] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.ReplicateError/ReplicateError-1.3.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.8 || Not tested with BASE 1.2.17+ but expected to work. ||
    80 ||  [wiki:se.lu.onk.VirtualArray Virtual Array] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz?format=raw 1.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.10 || Not tested with BASE 1.2.17+ but expected to work. ||
    81 || [wiki:se.lu.thep.WeNNI WeNNI] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/WeNNI/wenni-0.6.tar.gz?format=raw 0.6] || 1.2.17+ || Implementation of a published missing value imputation algorithm [[br]] http://www.biomedcentral.com/1471-2105/7/306 ||
    82 
    83  ''Quality Control (QC)''::
    84  ''Transformation''::
    85   [wiki:se.lu.onk.Smooth Smooth]: Works with BASE '''1.2.17+'''[[BR]]
    86  ''Normalization''::
    87    [wiki:se.lu.onk.popLowess popLowess]: Works with BASE '''1.2.17+'''[[BR]]
    88  ''Analysis''::
    89   [wiki:se.lu.onk.ZTest One class Z-test]: Works with BASE '''1.2.17+'''[[BR]]
     81|| [wiki:se.lu.onk.Smooth Smooth] || Transformation || || 1.2.17+, 2.7 || ||
     82|| [wiki:se.lu.onk.VirtualArray Virtual Array] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz?format=raw 1.1] ([http://baseplugins.thep.lu.se/attachment/wiki/se.lu.onk.VirtualArray/VirtualArray-1.1.tgz.MD5?format=raw MD5]) || 1.2.17+, 2.10 || Not tested with BASE 1.2.17+ but expected to work. ||
     83|| [wiki:se.lu.thep.WeNNI WeNNI] || Transformation || [http://baseplugins.thep.lu.se/attachment/wiki/WeNNI/wenni-0.6.tar.gz?format=raw 0.6] || 1.2.17+, 2.6 || Implementation of a published missing value imputation algorithm [[br]] http://www.biomedcentral.com/1471-2105/7/306 ||
     84|| [wiki:se.lu.onk.ZTest One class Z-test] || Analysis || || 1.2.17+ || ||