Changes between Version 31 and Version 32 of se.lu.onk.BAFsegmentation


Ignore:
Timestamp:
Mar 13, 2009, 6:15:28 PM (12 years ago)
Author:
markus
Comment:

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  • se.lu.onk.BAFsegmentation

    v31 v32  
    1010
    1111=== News ===
     12 
     13 * Mar. 13, 2009. BAFsegmentation 1.1.2 release. This is a minor bug-fix release. Fixed bugs include errors in documentation (default has never been to remove cnv probes), handling of when there are no probes for entire chromosomes, and 'split_samples.pl' can now handle locales where comma denotes the decimal point.
     14
    1215 * Feb. 6, 2009. BAFsegmentation 1.1.1 release. This is a minor bug-fix release fixing a bug in bookmark files generated for import into !BeadStudio.
    1316
     
    3134=== Download BAFsegmentation ===
    3235
    33 [http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1.1.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.1).]
     36[http://cbbp.thep.lu.se/~markus/software/BAFsegmentation/BAFsegmentation-1.1.2.zip?format=raw Download the latest stand-alone release (BAFsegmentation 1.1.2).]
    3437
    3538=== Supplemental Data ===
     
    7982    perl split_samples.pl --data_file=example/example_beadstudio_data.txt
    8083  }}}
    81   where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above.
     84  where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above. With some language settings !BeadStudio exports files with commas (,) as decimal points; 'split_samples.pl' replaces all commas (,) in data columns with points (.) the 'split_samples.pl' results files.
    8285
    8386  This script will generate one file per sample together with a file ''sample_names.txt'' in the BAFsegmentation subdirectory ''extracted''. These files are used when BAFsegmentation is run and can be deleted once the samples are normalized.
     
    9194  }}}
    9295
    93   This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly.
     96  This command will perform BAFsegmentation on the samples in the BAFsegmentation subdirectory ''extracted'' that are specified in the file ''sample_names.txt''. If you want to perform BAFsegmentation on a subset of samples you can edit ''sample_names.txt'' accordingly. Note that   BAFsegmentation requires points (.) for decimal points.
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