Changes between Version 14 and Version 15 of se.lu.onk.IlluminaSNPNormalization


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Timestamp:
Jun 9, 2008, 2:35:00 PM (13 years ago)
Author:
markus
Comment:

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  • se.lu.onk.IlluminaSNPNormalization

    v14 v15  
    3939''Input data format''
    4040  tQN is applied to data exported from !BeadStudio. For a set of samples, the file exported from !BeadStudio should be tab-delimited in the following format:
    41   ||Name||Chr||Position||sample1.X||sample1.Y||sample2.X||sample2.Y||sample3.X||sample3.Y|| 
    42   ||rs12354060||1||10004||0.04424883||1.818238||0.03157751||1.632767||0.04973672||1.770216||
    43   ||rs2691310||1||46844||0.7046126||1.305445||0.8322142||1.271329||0.8042333||1.151523||
    44   ||...||...||...||...||...||...||...||...||...||
     41  ||Name||Chr||Position||sample1.X||sample1.Y||sample2.X||sample2.Y||sample3.X||sample3.Y||...||
     42  ||rs12354060||1||10004||0.04424883||1.818238||0.03157751||1.632767||0.04973672||1.770216||...||
     43  ||rs2691310||1||46844||0.7046126||1.305445||0.8322142||1.271329||0.8042333||1.151523||...||
     44  ||...||...||...||...||...||...||...||...||...||...|
    4545
    4646  The data extracted from !BeadStudio needs to be split into a separate file for each sample using the script ''split_beadstudio_samples.pl''.