Changes between Version 6 and Version 7 of se.lu.onk.IlluminaSNPNormalization


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Timestamp:
Jun 2, 2008, 2:19:18 PM (13 years ago)
Author:
markus
Comment:

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  • se.lu.onk.IlluminaSNPNormalization

    v6 v7  
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    2828
    29   The data extracted from !BeadStudio needs to be split into a separate file for each sample using the script ''split_beadstudio_samples.pl''
     29  The data extracted from !BeadStudio needs to be split into a separate file for each sample using the script ''split_beadstudio_samples.pl''.
    3030
    3131  {{{ 
    32   ./split_beadstudio_samples.pl --beadstudio_file example/example_beadstudio_data.txt
     32  ./split_beadstudio_samples.pl --beadstudio_file=example/example_beadstudio_data.txt
    3333  }}}
    3434  where ''example_beadstudio_data.txt'' is a file exported from !BeadStudio in the format described above.
     
    5050  }}}
    5151
    52   generates one data file per sample in the tQN subdirectory ''normalized'' for further analysis using PennCNV. Alternatives for ''--output_format'' are ''QuantiSNP'', which generates one data file per sample for further analysis with QuantiSNP and ''!BeadStudio'', which is the default argument generating the default ''tQN_beadstudio.txt'' file with data for all samples.
     52  generates one data file per sample in the tQN subdirectory ''normalized'' for further analysis using PennCNV. Alternatives for ''--output_format'' are ''QuantiSNP'', which generates one data file per sample for further analysis with QuantiSNP and ''!BeadStudio'', which is the default argument generating the default ''tQN_beadstudio.txt'' file with data for all samples. Beadchip types for which there is a cluster file in the tQN subdirectory ''lib'' are supported by tQN.
    5353   
    5454