source: trunk/client/servlet/src/locale/en/dictionary @ 4089

Last change on this file since 4089 was 4089, checked in by olle, 12 years ago

Refs #668. Refs #287. Support for running msInspect feature detection from Proteios SE updated to allow user selected strategy option:

  1. Class/file action/file/UseSpectrumFileForMsInspectSearchExtension.java in client/servlet/ updated by adding a menu select box for selecting a strategy option. The option string parameter is coupled to new valid parameter VString RunMsInspect.VMSINSPECTSTRATEGY. The default option is marked "default", and corresponds to no strategy option being used.
  1. Class/file action/msInspect/RunMsInspect.java in client/servlet/ updated to retrieve the string from new valid parameter VString VMSINSPECTSTRATEGY and transferring it as a job parameter to plug-in class RunMsInspectPlugin.
  1. Class/file plugins/RunMsInspectPlugin.java in plugin/ updated to retrieve the strategy string from the job parameter. If the string is null or an empty string (corresponding to the default option), no changes are made to the msInspect command line. Otherwise, the retrieved string is used as value for an extra option --strategy=value in the msInspect command line.
  1. English dictionary file locale/en/dictionary in client/servlet/ updated with new string key.
File size: 36.7 KB
Line 
1# $Id: Controller.java 52 2006-04-09 20:28:45Z gregory $
2 
3# Copyright (C) 2006 Gregory Vincic
4# Copyright (C) 2007 Fredrik Levander, Gregory Vincic
5 
6# Files are copyright by their respective authors. The contributions to
7# files where copyright is not explicitly stated can be traced with the
8# source code revision system.
9 
10# This file is part of Proteios.
11# Available at http://www.proteios.org/
12 
13# Proteios is free software; you can redistribute it and/or
14# modify it under the terms of the GNU General Public License
15# as published by the Free Software Foundation; either version 2
16# of the License, or (at your option) any later version.
17 
18# Proteios is distributed in the hope that it will be useful,
19# but WITHOUT ANY WARRANTY; without even the implied warranty of
20# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
21# GNU General Public License for more details.
22 
23# You should have received a copy of the GNU General Public License
24# along with this program; if not, write to the Free Software
25# Foundation, Inc., 59 Temple Place - Suite 330,
26# Boston, MA  02111-1307, USA.
27
28# Keep the words sorted. This is easily done in unix with the following oneliner
29#
30# cat dictionary | grep -v '^#' | sort >> dictionary
31#
32# and then remove the previous list of words in this file
33#
34
35=
36Abort=Abort
37About=About
38Accession=Accession
39AccessionNumber=Accession no.
40Accuracy=Accuracy
41Action=Action
42ActiveProject=Active Project
43ActiveProjectId=Active Project ID
44AddContactInfo=Add contact info
45AddSampleInfo=Add sample name
46AddDiGESeparation=Add DiGE
47AddFiles=Add Files
48AdditionalInformation=Additional Information
49AddPreviousDimension=Add previous separation dimension
50AddProtocol=Add Protocol
51Address=Address
52Administrator=Administrator
53All=All
54AllowedFDR=Allowed FDR
55AnalysisTime=Analysis Time
56AnalyzerComment=Analyzer Comment
57AnalyzerInformation=Analyzer Information
58Analyzers=Analyzers
59AnalyzerType=Analyzer Type
60AnnotatedBiomaterials=Annotated biomaterials
61Annotation=Annotation
62AnnotationName=Annotation Name
63Annotations=Annotations
64ApexIntensity=Apex Intensity
65ApexRetentionTimeInMinutes=Apex retention time (min)
66AppendExtraIdToPrefix=Append optional gel external id or local sample id to prefix
67AppendTimestampToPrefix=Append YYYYMMDD_HHMM timestamp to prefix
68Apply=Apply
69AssociatedFiles=Associated Files
70Attribute=Attribute
71Attributes=Attributes
72AvailableGels=Available gels
73Basic=Basic
74BatchImportBatchBioMaterialImportPreview=Batch BioMaterial Import Preview
75BatchImportBioMaterialFixedColumns=BioMaterial fixed columns
76BatchImportBioMaterialInfo=BioMaterial info
77BatchImportIndex=Index
78BatchImportInputFile=InputFile
79BatchImportParentIndex=Parent Index
80BatchImportSummaryError=Summary: ERROR
81BatchImportSummaryOk=Summary: OK
82BioMaterials=Biomaterials
83BioSource=BioSource
84Blocker=Blocker
85Bytes=Bytes
86ChangeImageFile=Change image file
87ChangePassword=Change password
88ChangeProtocolFile=Change Protocol File
89Charge=Charge
90ChargeState=Charge State
91ClassName=Class Name
92ClearCombinedHits=Clear combinations
93ClearFeatures=Clear Feature Table
94ClearHits=Clear Hits Table
95ClearHitsQuestion=All contents of the hits table will be erased, do you want to continue?
96ClearSelectedHits=Clear selected hits
97ClearSpecialHits=Clear Hits
98Close=Close
99Closed=Closed
100CollectedFractions=Number of collected fractions
101Column=Column
102ColumnDisplayOrder=Display Order
103ColumnFilterSettings=Column Filter Settings
104Columns=Columns
105ColumnSortPriority=Priority
106Combined=Combined
107CombinedFDR=Combined Search FDR
108CombinedFDRUpperCutoff=Combined search FDR upper cutoff
109CombinedHitsMenu=Combined Hits
110CombinedHitsReport=Combined Hits Report
111comment=Comment
112Comment=Comment
113ComparePeptides=Compare peptides
114Compressed=Compressed
115CompressedSizeInBytes=Compressed size (bytes)
116ConcentrationInGramsPerLiter=Concentration (g protein/l)
117Condition=Condition
118Configure=Configure
119ConfigureTable=Configure Table
120Confirm=Confirm
121Contact=Contact
122ContactInfo=Contact Info
123ContactInformation=Contact Information
124Content=Content
125Copyright=Copyright
126Coverage=Coverage
127Create=Create
128Created=Created
129CreateDemoUser=Create demo user
130CreateImportJobs=Create import job[s]
131CreateJobs=Create job[s]
132CreationEvent=Creation event
133CutOff=Cut off
134Databases=Databases
135Date=Date
136Delete=Delete
137DeleteDirectory=Delete directory
138DeltaMassInDaltons=Deltamass (Da)
139denaturatingAgent=Denaturating Agent
140DenaturatingAgent=Denaturating Agent
141Description=Description
142Detached=Detached
143DetectorAcquisitionMode=Detector Acquisition Mode
144DetectorComment=Detector Comment
145DetectorInformation=Detector Information
146DetectorType=Detector Type
147DigestParameters=Digest parameters
148Directories=Directories
149Directory=Directory
150DirectorySharing=Directory Sharing
151Download=Download
152Edit=Edit
153EllipsisMenuItem=…
154email=email
155Email=E-mail
156EMail=E-mail
157Empty=Empty
158EmptyTrash=Empty Trash
159EndDate=End Date
160Ended=Ended
161EndTimeToleranceMinutes=End retention time tolerance (min)
162EndRetentionTimeInMinutes=End retention time (min)
163EnterContactData=Enter Contact Data
164EnterNewLocalSampleId=Or enter new:
165EnterSampleData=Enter Sample Data
166EnterUsedQuantityInMicroLiters=Specify used quantity (µl)
167EnterUsedQuantity=Specify used quantity
168EntryDate=Entry Date
169Error=Error
170EstimatedExecutionTime=Estimated execution time
171E-value=E-Value
172EValue=E-Value
173EventComment=Comment
174eventDate=Event Date
175EventDate=Event Date
176Events=Events
177EventTracker=Event Tracker
178EventType=Event Type
179ExclusionList=Exclusion/inclusion list
180ExclusionListFormat=Format
181ExpectationValue=E-Value
182ExpectationValue=Expectation Value
183ExperimentalMassInDaltons=Experimental Mass (Da)
184ExportAllItems=All items
185ExportMode=Export mode
186ExportProperties=Export properties
187ExportShownItemsOnly=Shown items only
188ExportToFile=Export to File
189Extensions=Extensions
190ExtensionsForDirectories=Extensions
191ExtensionsForFiles=Extensions
192ExtensionsForFileTypes=Extensions
193ExtensionsForHits=Extensions
194externalId=External ID
195ExternalId=External ID
196ExternalIdFilter=External ID filter
197ExtractExternalId=Extract external ID
198Extract=Extract
199ExtractOriginalQuantity=Extract original quantity
200Extracts=Extracts
201FastJobQueue=Fast
202Feature=Feature
203FeatureExternalId=Feature External ID
204FeatureFile=Feature File
205Features=Features
206File=File
207FileName=Filename
208Filename=Filename
209Files=Files
210FileType=File type
211FileWise=Per file
212FilterValue=Filter value
213FilterValueWildCard=Filter value (% as wild card)
214First=First
215Fixed=Fixed
216FixedModification=Fixed Modification
217FractionId=Fraction ID
218FractionIdOptional=Fraction ID (optional)
219FractionNames=Fraction identifiers
220FractionVolume=Fraction volume (µl)
221FragmentationType=Fragmentation Type
222FromAddress=From (address)
223FromName=From (name)
224GelBased=Gel Based
225GelElectrophoresis=Gel Electrophoresis
226GelExternalId=Gel
227gelExtId=External ID
228GelExtId=External ID
229Gel=Gel
230Gels=Gels
231GenerateProteins=Generate protein hits
232GenericFormTest=Generic Form Test
233Groups=Groups
234Guest=Guest
235HcdOnly=Only use HCD reporter ions
236Help=Help
237HighPriorityQueue=High priority
238Hit=Hit
239HitId=Hit ID
240HitsCombination=Search results in combined hit
241HitsComparisonCategory=Category
242HitsComparisonExtraPrefix=Append project names to prefix
243HitsComparisonIgnoreCombinedFDRUpperCutoff=Ignore Combined Search FDR
244HitsComparisonMenu=Hits Comparison
245HitsComparisonOnlyUseLeadingProteins=Only use leading proteins
246HitsComparisonReportBtn=Hits Comparison Report
247HitsComparisonReportComparisonType=Hits Comparison Report - Comparison type
248HitsComparisonReportComparisonTypeSelect=Comparison type
249HitsComparisonReportFilterSettings1=Hits Comparison Report - Filter Settings Hit Selection 1
250HitsComparisonReportFilterSettings2=Hits Comparison Report - Filter Settings Hit Selection 2
251HitsComparisonReportFilterSettings=Hits Comparison Report - Filter Settings
252HitsComparisonReport=Hits Comparison Report
253HitsComparisonReportOutput=Hits Comparison Report - Output
254HitsComparisonReportProject1CombinedFDRUpperCutoff=Combined Search FDR
255HitsComparisonReportProject1=Hit Selection 1 Project
256HitsComparisonReportProject1Id=Project ID
257HitsComparisonReportProject1Name=Project Name
258HitsComparisonReportProject2CombinedFDRUpperCutoff=Combined Search FDR
259HitsComparisonReportProject2=Hit Selection 2 Project
260HitsComparisonReportProject2Id=Project ID
261HitsComparisonReportProject2Name=Project Name
262HitsComparisonReportProjectSelection=Hits Comparison Report - Project Selection
263HitsComparisonReportProteinSettings=Hits Comparison Report - Protein Comparison Settings Only
264HitsComparisonReportScoreTypeSelect=Score Type
265HitSelectionNumber=Hit Selection #
266Hits=Hits
267HitsImport=Hits Import
268HitsImportMenu=Hits Import
269HitsImportNonGelWizard=Non-Gel Hits Import Wizard
270HitsImportWizard=Hits Import Wizard
271HitsReport=Hits Report
272HitsReportsMenu=Reports
273HomeDirectory=Home Directory
274Home=Home
275IdentificationResultFileName=Search results file
276IdentificationResultFile=Search results file
277Id=ID
278ImportedPeakLists=Imported Peak Lists
279ImportedSearches=Imported Searches
280ImportHitsNonGelWizardRegexPattern=Regex pattern:
281ImportHitsNonGelWizardStep1FormLegend=Step 1. Register peaklist files for local sample ID
282ImportHitsNonGelWizardStep2FormLegend=Step 2. Import protein identification results
283ImportHitsNonGelWizardUseRegexPattern=Use regex pattern to parse fraction ID from filename
284ImportHitsWizardStep1FormLegend=Step 1. Add spots and mapping to plates
285ImportHitsWizardStep2FormLegend=Step 2. Register peaklist files
286ImportHitsWizardStep3FormLegend=Step 3. Import protein identification results
287Import=Import
288ImportPlugins=Import plugins
289Imports=Imports
290InContext=InContext
291InDatabase=In Database
292InExtensions=In extensions
293InProject=in project
294InputSpectrumFileName=Input Spectrum File Name
295Installed=Installed
296Install=Install
297Institution=Institution
298Instruction=Instruction
299InstrumentComment=Instrument Comment
300InstrumentGeneral=Instrument General
301InstrumentInformation=Instrument Information
302Instrument=Instrument
303InstrumentName=Instrument Name
304InstrumentSerialNo=Instrument Serial No
305IntegratedIntensity=Integrated Intensity
306intensity=intensity
307Interactive=Interactive
308IonizationMode=Ionization Mode
309IonizationType=Ionization Type
310IPG=IPG
311IPGs=IPGs
312IPGsLongVersion=IPGs (Immobilized pH Gradients)
313isEmpty=is empty
314IsEmpty=is empty
315IsMicrotitrePlate=Is microtitre plate
316isNotADirectory=is not a directory
317IsNotADirectory=is not a directory
318isSecondary=Match related
319itemDeleted=item deleted
320ItemId=Item ID
321Item=Item
322itemsDeleted=items deleted
323JarFile=JarFile
324JarPath=JarPath
325Job=Job
326Jobs=Jobs
327JobType=Job type
328KeepRandom=Keep decoy hits
329LabeledExtract=Labeled Extract
330LabeledExtracts=Labeled Extracts
331Labeled=Labeled
332LabelExtract=Label Extract
333Label=Label
334largeProject=Large Project
335LargeProject=Large Project
336Last=Last
337LastServerMessages=Last Server Messages
338lengthInCentiMeters=Length (cm)
339LengthInCentiMeters=Length (cm)
340LIMS=LIMS
341LocalSampleId=Local sample ID
342Location=Location
343LoggedIn=Logged in
344LoggedInUsers=Logged-In Users
345Login=Login
346LoginName=Login
347LogInTime=Login time
348Logout=Logout
349MailServer=Mail server
350MakeExtract=Make Extract
351MakeSecondaryExtract=Make Secondary Extract
352MakeSecondaryLabeledExtract=Make Secondary Extract
353MascotDataFormatSelect=Data format
354MascotDecoySelect=Decoy
355MascotEnzymeSelect=Enzyme
356MascotErrorTolerantSelect=Error tolerant
357MascotFirstSearchNumber=First search number
358MascotFixedMods=Fixed modifications
359MascotInstrumentSelect=Instrument
360MascotLastSearchNumber=Last search number
361Mascot=Mascot
362MascotMascotQuery=Query
363MascotMassIonTypeSelect=Mass values
364MascotMassTypeSelect=Mass type
365MascotMissedCleavagesSelect=Maximum missed cleavages
366MascotMsMsToleranceUnitSelect=MS/MS tolerance unit
367MascotMsMSTol=MS/MS tol. &#177
368MascotOutputDirectory=Directory for retrieved files
369MascotOutputDirectoryId=Id of directory for retrieved files
370MascotParameterFile=Mascot Parameters File
371MascotParameterSetExtra=Mascot - Extra
372MascotParameterSetGeneral=Mascot - General
373MascotParameterSetGeneralMIS=Mascot - General - MS/MS Ions Search
374MascotParameterSetGeneralPMF=Mascot - General - Peptide Mass Fingerprint
375MascotParameterSetGeneralSQ=Mascot - General - Sequence Query
376MascotParameterSet=Mascot parameter set
377MascotParameterSets=Mascot parameter sets
378MascotParameterSetsInDatabase=Mascot parameter sets in database
379MascotParameterSetStorage=Mascot parameter sets
380MascotParameterSetStorageProperties=Mascot Parameter Set Storage Properties
381MascotParameterTemplateFile=Mascot Parameters Template File
382MascotPeptideChargeSelect=Peptide charge
383MascotPeptideIsotopeErrorSelect=#&nbsp;<sup>13</sup>C
384MascotPeptideToleranceUnitSelect=Peptide tolerance unit
385MascotPepTol=Peptide tol. &#177
386MascotPrecursor=Precursor [m/z]
387MascotProteinMass=Protein mass [kDa]
388MascotQuantitationSelect=Quantitation
389MascotQueryPeaks=Include peak list
390MascotReportTopSelect=Report top [hits]
391MascotResultDate=Result Date ('YYYY-MM-DD' or 'YYYYMMDD')
392MascotResultRetrievalParameters=Mascot Result Retrieval Parameters
393MascotSearchTitle=Search title
394MascotSearchType=Search type
395MascotSearchTypeSelect=Search type
396MascotSearchUserDataInput=Mascot search user data
397MascotSearchUserData=Mascot search user data
398MascotSequenceLibrarySelect=Database
399MascotServerURL=Mascot Server URL
400MascotShowUnassigned=Show peptide matches not assigned to protein hits
401MascotSpecies=Taxonomy
402MascotVariableMods=Variable modifications
403massEndInKiloDaltons=Mass End (kDa)
404MassEndInKiloDaltons=Mass End (kDa)
405massStartInKiloDaltons=Mass Start (kDa)
406MassStartInKiloDaltons=Mass Start (kDa)
407MassToChargeRatio = m/z
408MatchedPeaks=Matched Peaks
409MatchFeaturesHits=Match features and hits
410MaxNumMissedCleavages=Max Number of Missed Cleavages
411Md5=MD5
412Member=Member
413Members=Members
414Message=Message
415MgfFile=MGF File
416MicroPlate=Microplate
417MimeType=MIME Type
418MinPep=Minimum peptides
419MissingFile=Missing File
420Model=Model
421Modifications=Modifications
422MoreProjectsMenuItem=more
423Move=Move
424MsFile=MS File
425MsInspect=msInspect
426MsInspectFeatureDetection=msInspect Feature Detection
427MsInspectStrategySelect=Strategy
428MwInDaltons=Molecular weight (Da)
429MyFiles=My Files
430MyProfile=My Profile
431MyProjects=My Projects
432MyProtocols=My Protocols
433MzDataFile=mzData File
434MzMLFile=mzML File
435MzTolerance=m/z tolerance
436m/z=m/z
437Name=Name
438NewDirectory=New directory
439NewGel=New Gel
440NewGelScanEvent=New Gel Scanning Event
441NewGroup=New Group
442NewLabeledExtract=New Labeled Extract
443NewMascotParameterSetStorage=New Mascot Parameter Set
444New=New
445NewNews=New News
446NewOMSSAParameterSetStorage=New OMSSA Parameter Set
447NewProject=New Project
448NewProtocolFileAttachmentNote=not specified (re-open saved protocol to attach a file)
449NewProtocol=New Protocol
450NewSample=New Sample
451NewsDate=Date
452NewSecondaryExtract=New Secondary Extract
453NewSecondaryLabeledExtract=New Secondary Labeled Extract
454NewSeparationEvent=New Separation Event
455News=News
456NewStainingEvent=New Staining Event
457NewUser=New user
458NewXTandemParameterSetStorage=New X!Tandem Parameter Set
459NextCreateExportJobs=Next - Create export job[s]
460NextCreateHitsComparisonReportJob=Next - Create hits comparison report job
461NextCreateSpectrumFileContactAdderJobs=Next - Create job[s]
462NextCreateSpectrumFileSampleAdderJobs=Next - Create job[s]
463NextMascotCreateSearchJobs=Next - Create search job[s]
464NextMascotEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search
465Next=Next
466NextMsInspectCreateFeatureDetectionJobs=Next - Create feature detection job[s]
467NextOMSSACreateSearchJobs=Next - Create search job[s]
468NextOMSSAEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search
469NextPIKECreateSearchJobs=Next - Create search job[s]
470NextSelectHitsComparisonParameters=Next - Select hits comparison parameters
471NextSelectMascotParameterSetStorage=Next - Select Mascot parameter set
472NextSelectMascotSearchUserData=Next - Select Mascot Search User Data
473NextSelectOMSSAParameterSet=Next - Select OMSSA Parameter Set
474NextSelectPeakListFiles=Next - Select PeakList File[s]
475NextSelectPrideProtocolFileOptional=Next - Select PRIDE Protocol File (Optional)
476NextSelectRobotResultFiles=Next - Select Robot Result File[s]
477NextSelectSearchResultFiles=Next - Select Search Result File[s]
478NextSelectXTandemParameterSet=Next - Select X!Tandem Parameter Set
479NextSpectrum=Next spectrum
480NextStartXTandemSearch=Next - Create search job[s]
481NextXTandemCreateSearchJobs=Next - Create search job[s]
482NextXTandemEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search
483NoActiveProjectMenuItem=- no active project -
484NonGelBased=Non gel based
485no=no
486No=No
487NotificationConfiguration=Notification Configuration
488NotificationConfigurationSaved=Notification configuration saved
489NotificationMode=Use notification:
490NotSpecifiedDefaultUsed=Not specified - Default used
491NotSpecified=Not specified
492NotSpecifiedRequired=Not specified (*Required)
493NumberOfEntriesAfterTaxonomy=Number of Entries after Taxonomy
494NumberOfEntries=Number of Entries
495NumberOfResidues=Number of Residues
496OccamsRazor=Occams Razor
497OMSSAAutoMassAdjust=Automatic mass tolerance adjustment fraction
498OMSSAConsiderMult=Minimum charge to start using multiply charged products
499OMSSACutHi=Peak high intensity cutoff (fraction of most intense)
500OMSSACutInc=Peak intensity cutoff increment (fraction of most intense)
501OMSSACutLo=Peak low intensity cutoff (fraction of most intense)
502OMSSACutoff=E-value cutoff
503OMSSADoubleNum=Number of peaks allowed in double charge window
504OMSSADoubleWin=Double charge window in Da
505OMSSAEnzymeSelect=Enzyme
506OMSSAExactMass=Threshold in Da above which the mass of neutron should be added in exact mass search
507OMSSAFixedMods=Fixed modifications (ctrl key for multiple selection)
508OMSSAHitListLen=Hit list max length
509OMSSAIonsToSearch1=Ions to search 1
510OMSSAIonsToSearch1Select=Ions to search 1
511OMSSAIonsToSearch2=Ions to search 2
512OMSSAIonsToSearch2Select=Ions to search 2
513OMSSAMaxCharge=Upper bound of precursor charge
514OMSSAMaxMods=Maximum variable modification combinations searched per peptide
515OMSSAMaxNoEnzyme=Maximum size of peptides for no-enzyme and semi-tryptic searches (0=none)
516OMSSAMaxProductCharge=Maximum product charge to search
517OMSSAMaxProductions=Max number of ions in each series being searched (0=all)
518OMSSAMinCharge=Lower bound of precursor charge
519OMSSAMinHit=Minimum number of m/z matches a sequence library peptide must have for the hit to the peptide to be recorded
520OMSSAMinNoEnzyme=Minimum size of peptides for no-enzyme and semi-tryptic searches
521OMSSAMinSpectra=Minimum number of m/z values a spectrum must have to be searched
522OMSSAMissedCleave=Maximum missed cleavages
523OMSSAMsCalcCharge=How should precursor charges be determined? (1=believe the input file, 2=use a range)
524OMSSAMsCalcPlusOne=Should charge plus one be determined algorithmically? (1=yes)
525OMSSAMsMSTol=Product mass tolerance (Da)
526OMSSANMethionineSelect=N-term methionine should be cleaved
527OMSSANoCorrelationScore=Turn off correlation correction to score (1=off, 0=use correlation)
528OMSSA=OMSSA
529OMSSAParameterFile=OMSSA Parameters File
530OMSSAParameterSetExtra=OMSSA - Extra (Not used for web search)
531OMSSAParameterSetGeneral=OMSSA - General
532OMSSAParameterSet=OMSSA parameter set
533OMSSAParameterSetsInDatabase=OMSSA parameter sets in database
534OMSSAParameterSets=OMSSA parameter sets
535OMSSAParameterSetStorage=OMSSA parameter sets
536OMSSAParameterSetStorageProperties=OMSSA Parameter Set Storage Properties
537OMSSAParameterTemplateFile=OMSSA Parameters Template File
538OMSSAPepTol=Precursor mass tolerance (Da)
539OMSSAPlusOne=Fraction of product peaks below precursor to determine +1 precursor
540OMSSAPrecursorCull=Eliminate charge reduced precursors in spectra (0=no, 1=yes)
541OMSSAPrecursorMassSearchTypeSelect=Precursor ion search type
542OMSSAProbFollowingIon=Probability of consecutive ion (used in correlation correction)
543OMSSAProductMassSearchTypeSelect=Product ion search type
544OMSSAPseudoCount=Minimum number of precursors that match a spectrum
545OMSSAReplaceThresh=E-value threshold to replace a hit, 0 = only if better
546OMSSAResearchThresh=E-value threshold to iteratively search a spectrum again, 0 = always
547OMSSAScale=Scale
548OMSSASearchB1=Should first forward (b1) product ions be in search (1=no)
549OMSSASearchCTermProduct=Should C terminus ions be searched (1=no)
550OMSSASearchSpectrumTypeSelect=Spectrum type for default parameter file
551OMSSASequenceLibrarySelect=Sequence library
552OMSSASettingId=Setting id
553OMSSASingleNum=Number of peaks allowed in single charge window
554OMSSASingleWin=Single charge window in Da
555OMSSASpecies=Species to search (ctrl key for multiple selection)
556OMSSASubsetThresh=E-value threshold to include a sequence in the iterative search, 0 = all
557OMSSATopHitNum=Number of top intensity peaks in first pass
558OMSSAVariableMods=Variable modifications (ctrl key for multiple selection)
559OMSSAZDepSelect=Charge dependency of precursor mass tolerance
560OnlyThis=Only this
561OrderBy=Order By
562Organisation=Organisation
563Original=Original
564OriginalQuantityInMicroLiters=Original Quantity (&micro;l)
565OriginalSampleQuantityInMicroLiters=Original Sample Quantity (&micro;l)
566OriginalSearchResults=Original search results
567OtherSettings=Other settings
568Others=Others
569OutputDirectoryName=Output directory name
570OutputFileName=Output file name
571OutputFileNamePrefix=Output filename prefix (optional)
572Output=Output
573Overview=Overview
574Owner=Owner
575Own=Own
576ParameterFile=Parameter File
577Parameters=Parameters
578ParentPeakListSet=Parent peaklistset
579Password=Password
580PeakListFileName=Peaklist file
581PeakListFile=Peaklist file
582PeakListSet=Peak list set
583PeakListSetsInDatabase=Peak list sets in the database
584PeakListSets=Peak list sets
585PeakLists=Peaklists
586PendingJobs=Pending Jobs
587Pending=Pending
588PeptideCutOff=Peptide cutoff
589PeptideResults=Peptide search results
590PeptideSequence=Peptide Sequence
591percentAcrylAmid=Acrylamide (%)
592PercentAcrylAmid=Acrylamide (%)
593PercentAcrylamide=Acrylamide (%)
594PercentAcrylAmide=Acrylamide (%)
595PercentComplete=Complete (%)
596PerformMascorSearch=Perform Mascot Search
597PerformOMSSASearch=Perform OMSSA Search
598PerformSpectrumSearch=Spectrum Search
599PerformXTandemSearch=Perform X!Tandem Search
600PermissionDenied=Permission Denied
601Permissions=Permissions
602Personal=Personal
603Phone=Phone
604PiEnd=High pI
605piEnd=High pI boundary
606PIKEFieldSelect=Fields to show (ctrl key for multiple selection)
607PIKEGeneOntologyCheckSelect=Include Gene Ontology exhaustive search (Gene Ontology terms must be selected to be shown)
608PIKEInputFileTypeSelect=Input file type
609PIKEMaxDeepInput=Level of the Gene Ontology deep graphical representation
610PIKEOutputFileTypeSelect=Output file type (ctrl key for multiple selection)
611PIKEParameterSetInput=PIKE - Input
612PIKEParameterSetOutput=PIKE - Output
613PIKESourceDatabaseSelect=Source database
614PIKEUserMailInput=E-mail address
615PIKEUserNameInput=Your name
616Pi=Pi
617PiStart=Low pI
618piStart=Low pI boundary
619PKLFile=PKL File
620PlateExternalId=Plate external ID
621PlateId=Plate ID
622Plate=Plate
623PlateProperties=Plate properties
624PluginClassPath=Plugin class path
625PluginConfiguration=Plugin configuration
626Plugin=Plugin
627PluginDefinition=Plugin Definition
628Plugins=Plugins
629PluginVersion=Plugin version
630Pooled=Pooled
631PoolExtracts=Pool Extracts
632Precursor=Precursor
633PrecursorQuantity=Precursor quantity
634PreferencesMenuItem=Preferences...
635Preferences=Preferences
636PreviousDimensions=Previous separation dimensions
637Previous=Previous
638PreviousSpectrum=Previous spectrum
639PrideExperimentTitle=Experiment title
640PrideExportAfterVersionNumber=XML Export
641PrideExportBtn=PRIDE XML Export
642PrideExportFilterSettings=PRIDE XML Export - Filter Settings
643PrideExportOutput=PRIDE XML Export - Output
644PrideExport=PRIDE XML Export
645PrimaryCombined=Primary in search combination
646Priority=Priority
647Profile=Profile
648Progress=Progress
649ProjectDirectory=Project directory
650ProjectHomeDirectory=Project home directory
651ProjectId=Project ID
652Project=Project
653Projects=Projects
654ProjectType=Project Type
655PropertiesFor=Properties for
656PropertiesForHitsToDelete=Properties for hits to delete
657Properties=Properties
658Property=Property
659ProtCutOff=Protein FDR cutoff
660ProteinAccession=Protein accession number
661proteinAssay=Protein Assay
662ProteinAssay=Protein Assay
663ProteinAssembly=Protein Assembly
664Protein=Protein
665ProteinResults=Protein search results
666ProtocolFile=Protocol File
667protocol=Protocol
668Protocol=Protocol
669Protocols=Protocols
670ProtocolType=Protocol Type
671ProtocolType=Protocol Type
672PutJobInHighPriorityQueue=Put job in high priority queue
673Queue=Queue
674Queues=Queues
675QuantitationSettings=Settings for isobaric label quantification
676QuantityInMicroLiters=Quantity (&micro;l)
677Quantity=Quantity
678QuickImport=Quick Import
679QuotaTypeSystemId=Quota type
680RandomHitsPrefix=Decoy hits prefix
681ReadOnlyForm=Read-Only Form
682Read=Read
683RecentProjects=Recent Projects
684ReferenceIdx=Index of reference
685Refresh=Refresh
686ReleaseDate=Release Date
687RemainingJobs=Remaining Jobs
688RemainingQuantityInMicroLiters=Remaining Quantity (&micro;l)
689Remaining=Remaining
690RemainingSampleQuantityInMicroLiters=Remaining Sample Quantity (&micro;l)
691Removed=Removed
692Reports=Reports
693ReportTools=Report Tools
694ResetProtocolFile=Reset Protocol File
695ResolutionMethod=Resolution Method
696Resolution=Resolution
697ResolutionType=Resolution Type
698Restore=Restore
699Result=Result
700ResultFile=Result File
701RetentionTimeInMinutesDelta=RT delta (min)
702RetentionTimeInMinutes=Retention time (min)
703RetrieveProteinInfo=Retrieve protein info
704RMSError=RMS Error
705Role=Role
706Roles=Roles
707RootDirectory=Root Directory
708RootHome=Root Home
709RootMeanSquareError=RMS Error
710Root=Root
711RunExtension=Run extension
712RunImportPlugin=Run import plugin
713RunPlugin=Run plugin
714SampleBatch=Sample batch
715SampleComment=Sample comment
716SampleConcentrationInGramsPerLiter=Sample concentration (g/l)
717SampleExternalId=Sample external ID
718SampleInfo=Sample information
719SampleMassInGrams=Sample mass (g)
720SampleName=Sample name
721SampleNumber=Sample number
722SampleQuantityInMicroLiters=Sample Quantity (&micro;l)
723Sample=Sample
724Samples=Samples
725SampleState=Sample state
726SampleVolumeInMilliliters=Sample volume (ml)
727SaveAndSearchMascot=Save and Search Mascot
728SaveAndSearchOMSSA=Save and Search OMSSA
729SaveAndSearchXTandem=Save and Search X!Tandem
730SaveAndSearchXTandemUsingLocalInstallation=Save and Search X!Tandem using Local Installation
731SaveAsAndSearchMascot=Save As... and Search Mascot
732SaveAsAndSearchOMSSA=Save As... and Search OMSSA
733SaveAsAndSearchXTandem=Save As... and Search X!Tandem
734SaveAsOMSSAParameterSetStorage=Save OMSSA Parameter Set
735SaveAs=Save As...
736SaveAsXTandemParameterSetStorage=Save X!Tandem Parameter Set
737SaveInFile=Save in File
738SaveProperties=Save properties
739Save=Save
740ScanRate=Scan Rate
741Score=Score
742ScoreType=Score Type
743ScoreTypeSettings=Settings for score type
744Search=Search
745SearchDatabases=Search database(s)
746SearchDate=Searched
747SearchEngine=Search Engine
748Searches=Searches
749SearchModifications=Search Modifications
750SearchOMSSA=Search OMSSA
751SearchOMSSAUsingLocalInstallation=Search OMSSA using local installation
752SearchOMSSAViaWebInterface=Search OMSSA via web interface
753SearchResults=Search results
754SearchSetup=Search Setup
755SearchXTandem=Search X!Tandem
756SearchXTandemUsingLocalInstallation=Search X!Tandem using local installation
757SearchXTandemViaWebInterface=Search X!Tandem via web interface
758SelectFileType=Select File Type
759SelectLocalSampleId=Select existing local sample ID:
760SelectMascotParameterSetStorage=Select Mascot Parameter Set
761SelectMascotParameterTemplateFile=Select File to copy Mascot Parameters from
762SelectMascotResultRetrievalParameters=Select Mascot result retrieval parameters
763SelectMascotSearchSpectrumFiles=Mascot Search - Select Spectrum File[s]
764SelectMethod=Select method
765SelectMimeType=Select MIME type
766SelectOMSSAParameterSetStorage=Select OMSSA Parameter Set
767SelectOMSSAParameterTemplateFile=Select File to copy OMSSA Parameters from
768SelectOMSSASearchSpectrumFiles=OMSSA Search - Select Spectrum File[s]
769SelectPIKEParameterSet=Select PIKE Parameter Set
770SelectPlugin=Select plugin
771SelectPrideProtocolFile=Select File to copy PRIDE XML protocol block from (Optional)
772SelectProject=Select project
773SelectProtocolFile=Select Protocol File
774SelectSpectrumFile=Select Spectrum File
775SelectVisibleColumns=Select Visible Columns
776SelectXTandemParameterSetStorage=Select X!Tandem Parameter Set
777SelectXTandemParameterTemplateFile=Select File to copy X!Tandem Parameters from
778SelectXTandemSearchSpectrumFiles=X!Tandem Search - Select Spectrum File[s]
779SelectXTandemSpectrumFile=Select X!Tandem Spectrum File
780SeparationEvent=Separation Event
781SeparationMethod=Separation Method
782SeparationMethods=Separation Methods
783SessionAttributes=Session Attributes
784Sequence=Sequence
785ServerDescription=Server description
786ServerInformation=Server Information
787Server=Server
788SettingsForExport=Settings for the export
789SettingsForHitReportFile=Settings for the hit report file
790SettingsForReport=Settings for the report
791Settings=Settings
792Shared=Shared
793ShareRecursivley=Share recursively
794Share=Share
795SharingPermissions=Sharing Permissions
796ShowGels=Show Gels
797Show=Show
798SignalToNoiseRatio=S/N
799SizeInBytes=Size (bytes)
800Size=Size
801sizeXInCentiMeters=X size (cm)
802SizeXInCentiMeters=X size (cm)
803sizeYInCentiMeters=Y size (cm)
804SizeYInCentiMeters=Y size (cm)
805SlowJobQueue=Slow
806SmtpHostProteiosConfig=SMTP Host (in proteios.config)
807SmtpHost=SMTP Host
808solubilizationBuffer=Solubilization Buffer
809SolubilizationBuffer=Solubilization Buffer
810SourceInformation=Source Information
811Specificity=Specificity
812SpectrumFileContactInput=Contact - Input
813SpectrumFileContactOutput=Contact - Output
814SpectrumFileSampleInput=Sample - Input
815SpectrumFileSampleOutput=Sample - Output
816SpectrumFile=Spectrum File
817SpectrumId2=Spectrum Id
818SpectrumId3=Spectrum id
819SpectrumIdOrderNumber2=Spectrum Id (order #)
820SpectrumIdOrderNumber3=Spectrum id (order #)
821SpectrumIdOrderNumber=Spectrum ID (order #)
822SpectrumId=Spectrum ID
823SpectrumIteration=Spectrum iteration
824SpectrumMassCutoffHigh=Upper (m/z)
825SpectrumMassCutoffLow=Lower (m/z)
826SpectrumMassRangeSelection=Spectrum mass range
827SpectrumSearchesInDatabase=Spectrum searches in the database
828SpectrumSearches=Spectrum searches
829SpectrumSearchs=Spectrum searches
830SpectrumSearch=Spectrum identification result
831Spectrum=Spectrum
832SpectrumStringId=Spectrum ID (string)
833SpotId=Spot ID
834Spot=Spot
835SpotXPixel=SpotXPixel
836SpotYPixel=SpotYPixel
837StartDate=Start Date
838Started=Started
839StartHere=Start Here
840StartRetentionTimeInMinutes=Start retention time (min)
841StartTimeToleranceMinutes=Start retention time tolerance (min)
842Start=Start
843StatusMessage=Status Message
844Status=Status
845StorageLocation=Storage Location
846StoredInCompressedFormat=Stored in compressed format
847Supervisor=Supervisor
848SystemId=System ID
849SystemItem=System Item
850TableOptions=Table Options
851TablePreferencesConfiguration=Table Preferences Configuration
852TablePreferencesMode=Use table preferences:
853TablePreferencesReset=Reset table preferences
854TheoreticalMolecularMassInDaltons=Theoretical molecular mass (Da)
855TheoreticalPi=Theoretical pI
856TimeLoggedInHHMMSS=Time logged in (hh:mm:ss)
857TimeSinceLastAccessHHMMSS=Time since last access (hh:mm:ss)
858Title=Title
859ToAddress=To (address)
860TotalIntensity=Total Intensity
861TotalPeaks=Total Peaks
862Trashcan=Trashcan
863TrashProject=Delete
864Trash=Trash
865TransparentCompression=Transparent compression
866Type=Type
867UniformResourceIdentifier=URI
868UniqueSequences=Unique sequences
869UnsupportedFileType=Unsupported File Type
870Update=Update
871UploadDemoFiles=Upload demo files
872UploadFile=Upload file
873URI=URI
874Url=URL
875URL=URL
876UseAsProtocol=Use as protocol
877UseCombinedFDR=Use combined FDR
878UsedExtractAvailable=Used extract (available
879UsedExtract=Used Extract
880UsedLabeledExtractAvailable=Used labeled extract (available
881UsedLabeledExtract=Used Labeled Extract
882UseProteinFDR=Use protein FDR filter
883UsedQuantityInMicroLiters=Used Quantity (&micro;l)
884UsedQuantity=Used Quantity (&micro;l)
885UsedSampleAvailable=Used sample (available
886UsedSampleQuantityInMicroLiters=Used Sample Quantity (&micro;l)
887UsedSample=Used Sample
888Used=Used
889UseFileAsProtocol=Use file as protocol
890UseInProject=Use in project
891UseNotification=Use notification
892Username=Username
893Users=Users
894User=User
895Use=Use
896ValidationSettings=Settings for statistical filtering
897Value=Value
898Vendor=Vendor
899VerifyPassword=Verify password
900VersionIdentifier=Version Identifier
901VersionString=Version String
902Version=Version
903ViewImageFile=View image file
904ViewOrDownload=View/Download
905ViewProtocolFile=View Protocol File
906ViewProtocol=View Protocol
907ViewTrash=View Trash
908View=View
909Warning=Warning
910WellPosition=Well position
911Well=Well
912Wizard=Wizard
913Write=Write
914X!TandemParameterSet=X!Tandem parameter set
915XTandemListPathDefaultParameters=Default parameters
916XTandemListPathTaxonomyInformation=Taxonomy information
917XTandemOutputHistogramColumnWidth=Histogram column width
918XTandemOutputHistograms=Histograms
919XTandemOutputLogPath=Log path
920XTandemOutputMaximumValidExpectationValue=Maximum valid expectation value
921XTandemOutputMessage=Message
922XTandemOutputOneSequenceCopy=One sequence copy
923XTandemOutputParameters=Parameters
924XTandemOutputPathHashing=Path hashing
925XTandemOutputPath=Path
926XTandemOutputPerformance=Performance
927XTandemOutputProteins=Proteins
928XTandemOutputResults=Results
929XTandemOutputSequencePath=Sequence path
930XTandemOutputSequences=Sequences
931XTandemOutputSortResultsBy=Sort results by
932XTandemOutputSpectra=Spectra
933XTandemOutputXslPath=XSL path
934XTandemParameterFile=X!Tandem Parameters File
935XTandemParameterSetListPath=List path
936XTandemParameterSetOutput=Output
937XTandemParameterSetProtein=Protein
938XTandemParameterSetRefine=Refine
939XTandemParameterSetResidue=Residue
940XTandemParameterSetScoring=Scoring
941XTandemParameterSetsInDatabase=X!Tandem parameter sets in database
942XTandemParameterSetSpectrum=Spectrum
943XTandemParameterSetStandardSettings=Standard Settings
944XTandemParameterSetStorage=X!Tandem parameter sets
945XTandemParameterSetStorageProperties=X!Tandem Parameter Set Storage Properties
946XTandemParameterSets=X!Tandem parameter sets
947XTandemParameterSet=X!Tandem parameter set
948XTandemParameterTemplateFile=X!Tandem Parameters Template File
949XTandemProteinCleavageCTerminalMassChange=Cleavage C-terminal mass change
950XTandemProteinCleavageNTerminalMassChange=Cleavage N-terminal mass change
951XTandemProteinCleavageSite=Cleavage site
952XTandemProteinCleavageSiteEnter=or specify own
953XTandemProteinCleavageSiteSelect=Select cleavage site
954XTandemProteinCTerminalResidueModificationMass=C-terminal residue modification mass
955XTandemProteinHomologManagement=Homolog management
956XTandemProteinModifiedResidueMassFile=Modified residue mass file
957XTandemProteinNTerminalResidueModificationMass=N-terminal residue modification mass
958XTandemProteinTaxonEukaryotes=Taxon - Eukaryotes
959XTandemProteinTaxonProkaryotes=Taxon - Prokaryotes
960XTandemProteinTaxon=Taxon
961XTandemRefineMaximumValidExpectationValue=Maximum valid expectation value
962XTandemRefineModificationMassEnter=or specify own
963XTandemRefineModificationMass=Modification mass
964XTandemRefineModificationMassSelect=Select modification mass
965XTandemRefinePointMutations=Point mutations
966XTandemRefinePotentialCTerminusModifications=Potential C-terminus modifications
967XTandemRefinePotentialModificationMassEnter=or specify own
968XTandemRefinePotentialModificationMass=Potential modification mass
969XTandemRefinePotentialModificationMassSelect=Select modification mass
970XTandemRefinePotentialModificationMotif=Potential modification motif
971XTandemRefinePotentialNTerminusModifications=Potential N-terminus modifications
972XTandemRefine=Refine
973XTandemRefineSequencePath=Sequence path
974XTandemRefineSpectrumSynthesis=Spectrum synthesis
975XTandemRefineTicPercent=Tic  percent
976XTandemRefineUnanticipatedCleavage=Unanticipated cleavage
977XTandemRefineUsePotentialModificationsForFullRefinement=Use potential modifications for full refinement
978XTandemResidueModificationMassEnter=or specify own
979XTandemResidueModificationMass=Modification mass
980XTandemResidueModificationMassSelect=Select modification mass
981XTandemResiduePotentialModificationMassEnter=or specify own
982XTandemResiduePotentialModificationMass=Potential modification mass
983XTandemResiduePotentialModificationMassSelect=Select potential modification mass
984XTandemResiduePotentialModificationMotif=Potential modification motif
985XTandemScoringAIons=A ions
986XTandemScoringAlgorithm=Algorithm
987XTandemScoringBIons=B ions
988XTandemScoringCIons=C ions
989XTandemScoringCyclicPermutation=Cyclic permutation
990XTandemScoringIncludeReverse=Include reverse
991XTandemScoringMaxMissedCleavageSites=Maximum missed cleavage sites
992XTandemScoringMinIonCount=Minimum ion count (set to 1 for "k-score" scoring algorithm)
993XTandemScoringXIons=X ions
994XTandemScoringYIons=Y ions
995XTandemScoringZIons=Z ions
996X!TandemSearchSetup=X!Tandem Search Setup
997XTandemSpectrumDynamicRange=Dynamic range
998XTandemSpectrumFile=X!Tandem Spectrum File
999XTandemSpectrumFragmentMassType=Fragment mass type
1000XTandemSpectrumFragmentMonoisotopicMassError=Fragment monoisotopic mass error
1001XTandemSpectrumFragmentMonoisotopicMassErrorUnits=Fragment monoisotopic mass error units
1002XTandemSpectrumMaximumParentCharge=Maximum parent charge
1003XTandemSpectrumMaximumParentMPlusH=Maximum parent m+h
1004XTandemSpectrumMinimumFragmentMz=Minimum fragment mz
1005XTandemSpectrumMinimumParentMPlusH=Minimum parent m+h
1006XTandemSpectrumMinimumPeaks=Minimum peaks
1007XTandemSpectrumParentMonoisotopicMassErrorMinus=Parent monoisotopic mass error minus
1008XTandemSpectrumParentMonoisotopicMassErrorPlus=Parent monoisotopic mass error plus
1009XTandemSpectrumParentMonoisotopicMassErrorUnits=Parent monoisotopic mass error units
1010XTandemSpectrumParentMonoisotopicMassIsotopeError=Parent monoisotopic mass isotope error
1011XTandemSpectrumPath=Spectrum path
1012XTandemSpectrumSequenceBatchSize=Sequence batch size
1013XTandemSpectrumThreads=Threads
1014XTandemSpectrumTotalPeaks=Total peaks
1015XTandemSpectrumUseNoiseSuppression=Use noise suppression
1016XTandem=X!Tandem
1017yes=yes
1018Yes=Yes
1019YourSession=Your Session
1020ZoomedAndOriginalSpectrum=Zoomed and original spectrum
1021ZoomedSpectrum=Zoomed spectrum
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