source: trunk/client/servlet/src/locale/en/dictionary @ 4489

Last change on this file since 4489 was 4489, checked in by olle, 10 years ago

Refs #807. PRIDE XML export updated to allow addition of species information in the sampleDescription XML tag in the mzData part of the PRIDE XML file. The species information will be entered by the user in the form used to create the PRIDE XML export job. Species ontology, accession number, and name are all required for the information to be added to the PRIDE XML file.

  1. Class/file action/hit/PrideExport.java in client/servlet/ updated by adding new fields related to species information to the sample section of the form. The fields are coupled to new valid parameters defined in class CreatePrideExportJob. New private method Fieldset getSampleFieldset() added to increase code readability.
  2. Class/file action/hit/SelectPrideProtocolFileStep1a.java in client/servlet/ updated to retrieve values of new valid parameters related to species information from the request and saving them as session attributes.
  3. Class/file action/hit/CreatePrideExportJob.java in client/servlet/ updated with new valid parameters related to species information. The values of the parameters are retrieved from session attributes and transferred to the created job as job parameters.
  4. Class/file plugins/PrideExportPlugin.java in plugin/ updated to retrieve the values of new variables related to species information from job parameters. Private method void writeSampleBlock(XMLCrudeWriter3Impl xmlCrudeWriter) updated to write a cvParam tag in the sampleDescription tag with the species information, provided that this option has been selected and species ontology, accession number, and name have all been specified.
  5. English dictionary file locale/en/dictionary in client/servlet/ updated with new entries for various string keys.
File size: 42.9 KB
Line 
1# $Id: Controller.java 52 2006-04-09 20:28:45Z gregory $
2 
3# Copyright (C) 2006 Gregory Vincic
4# Copyright (C) 2007 Fredrik Levander, Gregory Vincic
5 
6# Files are copyright by their respective authors. The contributions to
7# files where copyright is not explicitly stated can be traced with the
8# source code revision system.
9 
10# This file is part of Proteios.
11# Available at http://www.proteios.org/
12 
13# Proteios is free software; you can redistribute it and/or
14# modify it under the terms of the GNU General Public License
15# as published by the Free Software Foundation; either version 2
16# of the License, or (at your option) any later version.
17 
18# Proteios is distributed in the hope that it will be useful,
19# but WITHOUT ANY WARRANTY; without even the implied warranty of
20# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
21# GNU General Public License for more details.
22 
23# You should have received a copy of the GNU General Public License
24# along with this program; if not, write to the Free Software
25# Foundation, Inc., 59 Temple Place - Suite 330,
26# Boston, MA  02111-1307, USA.
27
28# Keep the words sorted. This is easily done in unix with the following oneliner
29#
30# cat dictionary | grep -v '^#' | sort >> dictionary
31#
32# and then remove the previous list of words in this file
33#
34
35=
36Abort=Abort
37About=About
38Accession=Accession
39AccessionNumber=Accession no.
40Accuracy=Accuracy
41Action=Action
42ActiveProject=Active Project
43ActiveProjectId=Active Project ID
44AddBioMaterials=Add BioMaterials
45AddContactInfo=Add contact info
46AddSampleInfo=Add sample name
47AddDiGESeparation=Add DiGE
48AddFiles=Add Files
49AdditionalInformation=Additional Information
50AddPreviousDimension=Add previous separation dimension
51AddProtocol=Add Protocol
52AddSpeciesInfo=Add species info
53Address=Address
54Administrator=Administrator
55AlignTimeToleranceMinutes=Landmark time tolerance
56All=All
57AllowedFDR=Allowed FDR
58AnalysisTime=Analysis Time
59AnalyzerComment=Analyzer Comment
60AnalyzerInformation=Analyzer Information
61Analyzers=Analyzers
62AnalyzerType=Analyzer Type
63AnnotatedBiomaterials=Annotated biomaterials
64Annotation=Annotation
65AnnotationName=Annotation Name
66Annotations=Annotations
67ApexIntensity=Apex Intensity
68ApexRetentionTimeInMinutes=Apex retention time (min)
69AppendExtraIdToPrefix=Append optional gel external id or local sample id to prefix
70AppendTimestampToPrefix=Append YYYYMMDD_HHMM timestamp to prefix
71Apply=Apply
72AssociatedFiles=Associated Files
73Attribute=Attribute
74Attributes=Attributes
75AvailableGels=Available gels
76Basic=Basic
77BatchImportBatchBioMaterialImportPreview=Batch BioMaterial Import Preview
78BatchImportBioMaterialFixedColumns=BioMaterial fixed columns
79BatchImportBioMaterialInfo=BioMaterial info
80BatchImportIndex=Index
81BatchImportInputFile=InputFile
82BatchImportParentIndex=Parent Index
83BatchImportSummaryError=Summary: ERROR
84BatchImportSummaryOk=Summary: OK
85BioMaterials=Biomaterials
86BioSource=BioSource
87Blocker=Blocker
88Bytes=Bytes
89ChangeImageFile=Change image file
90ChangePassword=Change password
91ChangeProtocolFile=Change Protocol File
92Charge=Charge
93ChargeState=Charge State
94ClassName=Class Name
95ClearCombinedHits=Clear combinations
96ClearFeatures=Clear Feature Table
97ClearFeatureSequences=Clear Mapped Sequences
98ClearHits=Clear Hits Table
99ClearHitsQuestion=All contents of the hits table will be erased, do you want to continue?
100ClearSelectedHits=Clear selected hits
101ClearSpecialHits=Clear Hits
102Close=Close
103Closed=Closed
104CollectedFractions=Number of collected fractions
105Column=Column
106ColumnDisplayOrder=Display Order
107ColumnFilterSettings=Column Filter Settings
108Columns=Columns
109ColumnSortPriority=Priority
110Combined=Combined
111CombinedFDR=Combined Search FDR
112CombinedFDRUpperCutoff=Combined search FDR upper cutoff
113CombinedHitsMenu=Combined Hits
114CombinedHitsReport=Combined Hits Report
115comment=Comment
116Comment=Comment
117CreateFeatureReport=Create Feature Report
118ComparePeptides=Compare peptides
119Compressed=Compressed
120CompressedSizeInBytes=Compressed size (bytes)
121ConcentrationInGramsPerLiter=Concentration (g protein/l)
122Condition=Condition
123Configure=Configure
124ConfigureTable=Configure Table
125Confirm=Confirm
126Contact=Contact
127ContactInfo=Contact Info
128ContactInformation=Contact Information
129Content=Content
130CopyFilesToExternalDirectory=Copy files to external directory
131Copyright=Copyright
132Coverage=Coverage
133Create=Create
134Created=Created
135CreateDemoUser=Create demo user
136CreateImportJobs=Create import job[s]
137CreateJobs=Create job[s]
138CreationEvent=Creation event
139CutOff=Cut off
140Databases=Databases
141Date=Date
142Delete=Delete
143DeleteDirectory=Delete directory
144DeltaMassInDaltons=Deltamass (Da)
145denaturatingAgent=Denaturating Agent
146DenaturatingAgent=Denaturating Agent
147Description=Description
148Detached=Detached
149DetectorAcquisitionMode=Detector Acquisition Mode
150DetectorComment=Detector Comment
151DetectorInformation=Detector Information
152DetectorType=Detector Type
153DigestParameters=Digest parameters
154Directories=Directories
155Directory=Directory
156DirectorySharing=Directory Sharing
157Download=Download
158Edit=Edit
159EllipsisMenuItem=…
160email=email
161Email=E-mail
162EMail=E-mail
163Empty=Empty
164EmptyTrash=Empty Trash
165EndDate=End Date
166Ended=Ended
167EndTimeToleranceMinutes=End retention time tolerance (min)
168EndRetentionTimeInMinutes=End retention time (min)
169EnterContactData=Enter Contact Data
170EnterNewLocalSampleId=Or enter new:
171EnterSampleData=Enter Sample Data
172EnterUsedQuantityInMicroLiters=Specify used quantity (µl)
173EnterUsedQuantity=Specify used quantity
174EntryDate=Entry Date
175Error=Error
176EstimatedExecutionTime=Estimated execution time
177E-value=E-Value
178EValue=E-Value
179EventComment=Comment
180eventDate=Event Date
181EventDate=Event Date
182Events=Events
183EventTracker=Event Tracker
184EventType=Event Type
185ExclusionList=Exclusion/inclusion list
186ExclusionListFormat=Format
187ExpectationValue=E-Value
188ExpectationValue=Expectation Value
189ExperimentalMassInDaltons=Experimental Mass (Da)
190ExportAllItems=All items
191ExportMode=Export mode
192ExportProperties=Export properties
193ExportShownItemsOnly=Shown items only
194ExportToFile=Export to File
195Extensions=Extensions
196ExtensionsForDirectories=Extensions
197ExtensionsForFiles=Extensions
198ExtensionsForFileTypes=Extensions
199ExtensionsForHits=Extensions
200ExternalDirectoryPath=External directory path
201externalId=External ID
202ExternalId=External ID
203ExternalIdFilter=External ID filter
204ExtractExternalId=Extract external ID
205Extract=Extract
206ExtractOriginalQuantity=Extract original quantity
207Extracts=Extracts
208FastJobQueue=Fast
209Feature=Feature
210FeatureExternalId=Feature External ID
211FeatureFile=Feature File
212Features=Features
213File=File
214FileName=Filename
215Filename=Filename
216Files=Files
217FileType=File type
218FileWise=Per file
219FilterValue=Filter value
220FilterValueWildCard=Filter value (% as wild card)
221First=First
222Fixed=Fixed
223FixedModification=Fixed Modification
224FractionId=Fraction ID
225FractionIdOptional=Fraction ID (optional)
226FractionNames=Fraction identifiers
227FractionVolume=Fraction volume (µl)
228FragmentationType=Fragmentation Type
229FromAddress=From (address)
230FromName=From (name)
231GelBased=Gel Based
232GelElectrophoresis=Gel Electrophoresis
233GelExternalId=Gel
234gelExtId=External ID
235GelExtId=External ID
236Gel=Gel
237Gels=Gels
238GenerateProteins=Generate protein hits
239GenericFormTest=Generic Form Test
240GetIncludeFilesFromAssociations=Get files from associations
241Groups=Groups
242Guest=Guest
243HcdOnly=Only use HCD reporter ions
244Help=Help
245HighPriorityQueue=High priority
246Hit=Hit
247HitId=Hit ID
248HitsCombination=Search results in combined hit
249HitsComparisonMenu=Hits Comparison
250HitsComparisonReport=Hits Comparison Report
251HitsComparisonReportBtn=Hits Comparison Report
252HitsComparisonReportCategory=Category
253HitsComparisonReportComparisonType=Comparison type
254HitsComparisonReportComparisonTypeSelect=Comparison type
255HitsComparisonReportExtraPrefix=Append project names to prefix
256HitsComparisonReportFilterSettings1=Hit Selection 1 - Filter Settings
257HitsComparisonReportFilterSettings2=Hit Selection 2 - Filter Settings
258HitsComparisonReportFilterSettings=Hits Comparison Report - Filter Settings
259HitsComparisonReportGeneralSettings=General
260HitsComparisonReportIgnoreCombinedFDRUpperCutoff=Ignore Combined Search FDR
261HitsComparisonReportIncludeModifications=Include modifications
262HitsComparisonReportOnlyUseLeadingProteins=Only use leading proteins
263HitsComparisonReportOutput=Output
264HitsComparisonReportPeptideSettings=Peptide Comparison Settings
265HitsComparisonReportProject1CombinedFDRUpperCutoff=Combined Search FDR
266HitsComparisonReportProject1=Project
267HitsComparisonReportProject1Id=Project ID
268HitsComparisonReportProject1Name=Project Name
269HitsComparisonReportProject2CombinedFDRUpperCutoff=Combined Search FDR
270HitsComparisonReportProject2=Project
271HitsComparisonReportProject2Id=Project ID
272HitsComparisonReportProject2Name=Project Name
273HitsComparisonReportProjectSelection=Hits Comparison Report - Project Selection
274HitsComparisonReportProjectSelection1=Hit Selection 1 - Project Selection
275HitsComparisonReportProjectSelection2=Hit Selection 2 - Project Selection
276HitsComparisonReportProteinSettings=Protein Comparison Settings
277HitsComparisonReportQuantitativeComparison=Quantitative report
278HitsComparisonReportQuantitativeSettings=Quantitative Comparison Settings
279HitsComparisonReportQuantityEntrySelect=Entry used if several values exist
280HitsComparisonReportQuantityVariableSelect=Quantity variable
281HitsComparisonReportReplicateWiseComparison=Technical replicates treated separately
282HitsComparisonReportScoreTypeSelect=Score Type
283HitsComparisonReportStep1=Hits Comparison Report - Step 1 of 2
284HitsComparisonReportStep2=Hits Comparison Report - Step 2 of 2
285HitSelectionNumber=Hit Selection #
286Hits=Hits
287HitsImport=Hits Import
288HitsImportMenu=Hits Import
289HitsImportNonGelWizard=Non-Gel Hits Import Wizard
290HitsImportNonGelWizardAdditionalParameters=Non-Gel Hits Import - Additional Parameters
291HitsImportWizard=Hits Import Wizard
292HitsPublishingMenu=Publishing
293HitsReport=Hits Report
294HitsReportsMenu=Reports
295HomeDirectory=Home Directory
296Home=Home
297IdentificationResultFileName=Search results file
298IdentificationResultFile=Search results file
299Id=ID
300ImportedPeakLists=Imported Peak Lists
301ImportedSearches=Imported Searches
302ImportHitsNonGelWizardRegexPatternFractionId=Regex pattern:
303ImportHitsNonGelWizardRegexPatternReplicateId=Regex pattern:
304ImportHitsNonGelWizardStep1AdditionalParametersDescription=Step 1. Additional Parameters Description
305ImportHitsNonGelWizardStep1FormLegend=Step 1. Register peaklist files for local sample ID
306ImportHitsNonGelWizardStep1FormLegendStep1=Additional Parameters
307ImportHitsNonGelWizardStep1FormGeneralParameters=General Parameters
308ImportHitsNonGelWizardStep1Description=Step 1. Description
309ImportHitsNonGelWizardStep1FormLegendStep1a=Step 1a. Register peaklist files for local sample ID
310ImportHitsNonGelWizardStep2FormLegend=Step 2. Import protein identification results
311ImportHitsNonGelWizardUseRegexPatternFractionId=Use regex pattern to parse fraction ID from filename
312ImportHitsNonGelWizardUseRegexPatternReplicateId=Use regex pattern to parse replicate ID from filename
313ImportHitsWizardStep1FormLegend=Step 1. Add spots and mapping to plates
314ImportHitsWizardStep2FormLegend=Step 2. Register peaklist files
315ImportHitsWizardStep3FormLegend=Step 3. Import protein identification results
316Import=Import
317ImportPlugins=Import plugins
318Imports=Imports
319InContext=InContext
320IncludeOtherFiles=Other files
321IncludePeaklistFiles=Peaklist files
322IncludeRawFiles=Raw files
323IncludeResultFiles=Result files
324IncludeSearchFiles=Search files
325InDatabase=In Database
326InExtensions=In extensions
327InProject=in project
328InputSpectrumFileName=Input Spectrum File Name
329Installed=Installed
330Install=Install
331Institution=Institution
332Instruction=Instruction
333InstrumentComment=Instrument Comment
334InstrumentGeneral=Instrument General
335InstrumentInformation=Instrument Information
336Instrument=Instrument
337InstrumentName=Instrument Name
338InstrumentSerialNo=Instrument Serial No
339IntegratedIntensity=Integrated Intensity
340intensity=intensity
341Interactive=Interactive
342IonizationMode=Ionization Mode
343IonizationType=Ionization Type
344IPG=IPG
345IPGs=IPGs
346IPGsLongVersion=IPGs (Immobilized pH Gradients)
347isEmpty=is empty
348IsEmpty=is empty
349IsMicrotitrePlate=Is microtitre plate
350isNotADirectory=is not a directory
351IsNotADirectory=is not a directory
352isSecondary=Match related
353itemDeleted=item deleted
354ItemId=Item ID
355Item=Item
356itemsDeleted=items deleted
357JarFile=JarFile
358JarPath=JarPath
359Job=Job
360Jobs=Jobs
361JobType=Job type
362KeepRandom=Keep decoy hits
363LabeledExtract=Labeled Extract
364LabeledExtracts=Labeled Extracts
365Labeled=Labeled
366LabelExtract=Label Extract
367Label=Label
368largeProject=Large Project
369LargeProject=Large Project
370Last=Last
371LastServerMessages=Last Server Messages
372lengthInCentiMeters=Length (cm)
373LengthInCentiMeters=Length (cm)
374LIMS=LIMS
375LocalSampleId=Local sample ID
376LocalSampleIdEntryMode=Local sample ID input:
377Location=Location
378LoggedIn=Logged in
379LoggedInUsers=Logged-In Users
380Login=Login
381LoginName=Login
382LogInTime=Login time
383Logout=Logout
384MailServer=Mail server
385MakeExtract=Make Extract
386MakeSecondaryExtract=Make Secondary Extract
387MakeSecondaryLabeledExtract=Make Secondary Extract
388MascotDataFormatSelect=Data format
389MascotDecoySelect=Decoy
390MascotEnzymeSelect=Enzyme
391MascotErrorTolerantSelect=Error tolerant
392MascotFirstSearchNumber=First search number
393MascotFixedMods=Fixed modifications
394MascotInstrumentSelect=Instrument
395MascotLastSearchNumber=Last search number
396Mascot=Mascot
397MascotImportResults=Import results
398MascotMascotQuery=Query
399MascotMassIonTypeSelect=Mass values
400MascotMassTypeSelect=Mass type
401MascotMissedCleavagesSelect=Maximum missed cleavages
402MascotMsMsToleranceUnitSelect=MS/MS tolerance unit
403MascotMsMSTol=MS/MS tol. &#177
404MascotOutputDirectory=Directory for retrieved files
405MascotOutputDirectoryId=Id of directory for retrieved files
406MascotParameterFile=Mascot Parameters File
407MascotParameterSetAdditionalOptionsNotInParameterSet=Mascot - Additional Options not in Parameter Set
408MascotParameterSetExtra=Mascot - Extra
409MascotParameterSetGeneral=Mascot - General
410MascotParameterSetGeneralMIS=Mascot - General - MS/MS Ions Search
411MascotParameterSetGeneralPMF=Mascot - General - Peptide Mass Fingerprint
412MascotParameterSetGeneralSQ=Mascot - General - Sequence Query
413MascotParameterSet=Mascot parameter set
414MascotParameterSets=Mascot parameter sets
415MascotParameterSetsInDatabase=Mascot parameter sets in database
416MascotParameterSetStorage=Mascot parameter sets
417MascotParameterSetStorageProperties=Mascot Parameter Set Storage Properties
418MascotParameterTemplateFile=Mascot Parameters Template File
419MascotPeptideChargeSelect=Peptide charge
420MascotPeptideIsotopeErrorSelect=#&nbsp;<sup>13</sup>C
421MascotPeptideToleranceUnitSelect=Peptide tolerance unit
422MascotPepTol=Peptide tol. &#177
423MascotPrecursor=Precursor [m/z]
424MascotProteinMass=Protein mass [kDa]
425MascotQuantitationSelect=Quantitation
426MascotQueryPeaks=Include peak list
427MascotReportTopSelect=Report top [hits]
428MascotResultDate=Result Date ('YYYY-MM-DD' or 'YYYYMMDD')
429MascotResultRetrievalParameters=Mascot Result Retrieval Parameters
430MascotSearchTitle=Search title
431MascotSearchType=Search type
432MascotSearchTypeSelect=Search type
433MascotSearchUserDataInput=Mascot search user data
434MascotSearchUserData=Mascot search user data
435MascotSequenceLibrarySelect=Database
436MascotServerURL=Mascot Server URL
437MascotShowUnassigned=Show peptide matches not assigned to protein hits
438MascotSpecies=Taxonomy
439MascotVariableMods=Variable modifications
440massEndInKiloDaltons=Mass End (kDa)
441MassEndInKiloDaltons=Mass End (kDa)
442massStartInKiloDaltons=Mass Start (kDa)
443MassStartInKiloDaltons=Mass Start (kDa)
444MassToChargeRatio = m/z
445MatchedPeaks=Matched Peaks
446MatchFeaturesHits=Match Features and Hits
447MaxNumMissedCleavages=Max Number of Missed Cleavages
448Md5=MD5
449Member=Member
450Members=Members
451Message=Message
452MgfFile=MGF File
453MicroPlate=Microplate
454MimeType=MIME Type
455MinPep=Minimum peptides
456MissingFile=Missing File
457Model=Model
458Modifications=Modifications
459MoreProjectsMenuItem=more
460Move=Move
461MsFile=MS File
462MsInspect=msInspect
463MsInspectAdvancedOptions=Advanced options
464MsInspectOptions=msInspect options
465MsInspectFeatureDetection=msInspect Feature Detection
466MsInspectImportResultsInPipeline=Import results
467MsInspectStrategySelect=Strategy
468MwInDaltons=Molecular weight (Da)
469MyFiles=My Files
470MyProfile=My Profile
471MyProjects=My Projects
472MyProtocols=My Protocols
473MzDataFile=mzData File
474MzMLFile=mzML File
475MzTolerance=m/z tolerance
476m/z=m/z
477Name=Name
478NewDirectory=New directory
479NewGel=New Gel
480NewGelScanEvent=New Gel Scanning Event
481NewGroup=New Group
482NewLabeledExtract=New Labeled Extract
483NewMascotParameterSetStorage=New Mascot Parameter Set
484New=New
485NewNews=New News
486NewOMSSAParameterSetStorage=New OMSSA Parameter Set
487NewProject=New Project
488NewProtocolFileAttachmentNote=not specified (re-open saved protocol to attach a file)
489NewProtocol=New Protocol
490NewSample=New Sample
491NewsDate=Date
492NewSecondaryExtract=New Secondary Extract
493NewSecondaryLabeledExtract=New Secondary Labeled Extract
494NewSeparationEvent=New Separation Event
495News=News
496NewStainingEvent=New Staining Event
497NewUser=New user
498NewXTandemParameterSetStorage=New X!Tandem Parameter Set
499NextCreateExportJobs=Next - Create export job[s]
500NextCreateHitsComparisonReportJob=Next - Create hits comparison report job
501NextCreateSpectrumFileContactAdderJobs=Next - Create job[s]
502NextCreateSpectrumFileSampleAdderJobs=Next - Create job[s]
503NextMascotCreateSearchJobs=Next - Create search job[s]
504NextMascotCreateSearchJobsAndImportResults=Next - Create search job[s] and import results
505NextMascotEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search
506Next=Next
507NextMsInspectCreateFeatureDetectionJobs=Next - Create feature detection job[s]
508NextOMSSACreateSearchJobs=Next - Create search job[s]
509NextOMSSACreateSearchJobsAndImportResults=Next - Create search job[s] and import results
510NextOMSSAEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search
511NextOpenMsCreateFeatureDetectionJobs=Next - Create feature detection job[s]
512NextPIKECreateSearchJobs=Next - Create search job[s]
513NextSelectAdditionalParametersForPeakListFileImport=Next - Select Additional Parameters for PeakList File[s] Import
514NextSelectHitsComparisonParameters=Next - Select hits comparison parameters
515NextSelectMascotParameterSetStorage=Next - Select Mascot parameter set
516NextSelectMascotSearchUserData=Next - Select Mascot Search User Data
517NextSelectMoreFilesOfSameType=Next - Select more files of same type
518NextSelectMsInspectParameters=Next - Select msInspect Options
519NextSelectOMSSAParameterSet=Next - Select OMSSA Parameter Set
520NextSelectOpenMsParameters=Next - Select OpenMS Options
521NextSelectPeakListFiles=Next - Select PeakList File[s]
522NextSelectPrideProtocolFileOptional=Next - Select PRIDE Protocol File (Optional)
523NextSelectProteomeXchangeIncludeFiles=Next - Select ProteomeXchange include file[s]
524NextSelectProteomeXchangeOtherFiles=Next - Select ProteomeXchange other file[s]
525NextSelectProteomeXchangePeaklistFiles=Next - Select ProteomeXchange peaklist file[s]
526NextSelectProteomeXchangeRawFiles=Next - Select ProteomeXchange raw file[s]
527NextSelectProteomeXchangeResultFiles=Next - Select ProteomeXchange result file[s]
528NextSelectProteomeXchangeSearchFiles=Next - Select ProteomeXchange search file[s]
529NextSelectRobotResultFiles=Next - Select Robot Result File[s]
530NextSelectSearchResultFiles=Next - Select Search Result File[s]
531NextSelectXTandemParameterSet=Next - Select X!Tandem Parameter Set
532NextSpectrum=Next spectrum
533NextStartXTandemSearch=Next - Create search job[s]
534NextXTandemCreateSearchJobs=Next - Create search job[s]
535NextXTandemCreateSearchJobsAndImportResults=Next - Create search job[s] and import results
536NextXTandemEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search
537NoActiveProjectMenuItem=- no active project -
538NonGelBased=Non gel based
539no=no
540No=No
541Note=Note
542NotificationConfiguration=Notification Configuration
543NotificationConfigurationSaved=Notification configuration saved
544NotificationMode=Use notification:
545NotSpecifiedDefaultUsed=Not specified - Default used
546NotSpecified=Not specified
547NotSpecifiedRequired=Not specified (*Required)
548NumberOfEntriesAfterTaxonomy=Number of Entries after Taxonomy
549NumberOfEntries=Number of Entries
550NumberOfResidues=Number of Residues
551OccamsRazor=Occams Razor
552OMSSAAutoMassAdjust=Automatic mass tolerance adjustment fraction
553OMSSAConsiderMult=Minimum charge to start using multiply charged products
554OMSSACutHi=Peak high intensity cutoff (fraction of most intense)
555OMSSACutInc=Peak intensity cutoff increment (fraction of most intense)
556OMSSACutLo=Peak low intensity cutoff (fraction of most intense)
557OMSSACutoff=E-value cutoff
558OMSSADoubleNum=Number of peaks allowed in double charge window
559OMSSADoubleWin=Double charge window in Da
560OMSSAEnzymeSelect=Enzyme
561OMSSAExactMass=Threshold in Da above which the mass of neutron should be added in exact mass search
562OMSSAFixedMods=Fixed modifications (ctrl key for multiple selection)
563OMSSAHitListLen=Hit list max length
564OMSSAImportResults=Import results
565OMSSAIonsToSearch1=Ions to search 1
566OMSSAIonsToSearch1Select=Ions to search 1
567OMSSAIonsToSearch2=Ions to search 2
568OMSSAIonsToSearch2Select=Ions to search 2
569OMSSAMaxCharge=Upper bound of precursor charge
570OMSSAMaxMods=Maximum variable modification combinations searched per peptide
571OMSSAMaxNoEnzyme=Maximum size of peptides for no-enzyme and semi-tryptic searches (0=none)
572OMSSAMaxProductCharge=Maximum product charge to search
573OMSSAMaxProductions=Max number of ions in each series being searched (0=all)
574OMSSAMinCharge=Lower bound of precursor charge
575OMSSAMinHit=Minimum number of m/z matches a sequence library peptide must have for the hit to the peptide to be recorded
576OMSSAMinNoEnzyme=Minimum size of peptides for no-enzyme and semi-tryptic searches
577OMSSAMinSpectra=Minimum number of m/z values a spectrum must have to be searched
578OMSSAMissedCleave=Maximum missed cleavages
579OMSSAMsCalcCharge=How should precursor charges be determined? (1=believe the input file, 2=use a range)
580OMSSAMsCalcPlusOne=Should charge plus one be determined algorithmically? (1=yes)
581OMSSAMsMSTol=Product mass tolerance (Da)
582OMSSANMethionineSelect=N-term methionine should be cleaved
583OMSSANoCorrelationScore=Turn off correlation correction to score (1=off, 0=use correlation)
584OMSSA=OMSSA
585OMSSAParameterFile=OMSSA Parameters File
586OMSSAParameterSetAdditionalOptionsNotInParameterSet=OMSSA - Additional Options not in Parameter Set
587OMSSAParameterSetExtra=OMSSA - Extra (Not used for web search)
588OMSSAParameterSetGeneral=OMSSA - General
589OMSSAParameterSet=OMSSA parameter set
590OMSSAParameterSetsInDatabase=OMSSA parameter sets in database
591OMSSAParameterSets=OMSSA parameter sets
592OMSSAParameterSetStorage=OMSSA parameter sets
593OMSSAParameterSetStorageProperties=OMSSA Parameter Set Storage Properties
594OMSSAParameterTemplateFile=OMSSA Parameters Template File
595OMSSAPepTol=Precursor mass tolerance (Da)
596OMSSAPlusOne=Fraction of product peaks below precursor to determine +1 precursor
597OMSSAPrecursorCull=Eliminate charge reduced precursors in spectra (0=no, 1=yes)
598OMSSAPrecursorMassSearchTypeSelect=Precursor ion search type
599OMSSAProbFollowingIon=Probability of consecutive ion (used in correlation correction)
600OMSSAProductMassSearchTypeSelect=Product ion search type
601OMSSAPseudoCount=Minimum number of precursors that match a spectrum
602OMSSAReplaceThresh=E-value threshold to replace a hit, 0 = only if better
603OMSSAResearchThresh=E-value threshold to iteratively search a spectrum again, 0 = always
604OMSSAScale=Scale
605OMSSASearchB1=Should first forward (b1) product ions be in search (1=no)
606OMSSASearchCTermProduct=Should C terminus ions be searched (1=no)
607OMSSASearchSpectrumTypeSelect=Spectrum type for default parameter file
608OMSSASequenceLibrarySelect=Sequence library
609OMSSASettingId=Setting id
610OMSSASingleNum=Number of peaks allowed in single charge window
611OMSSASingleWin=Single charge window in Da
612OMSSASpecies=Species to search (ctrl key for multiple selection)
613OMSSASubsetThresh=E-value threshold to include a sequence in the iterative search, 0 = all
614OMSSATopHitNum=Number of top intensity peaks in first pass
615OMSSAVariableMods=Variable modifications (ctrl key for multiple selection)
616OMSSAZDepSelect=Charge dependency of precursor mass tolerance
617OnlyThis=Only this
618OpenMs=OpenMS
619OpenMsAdvancedOptions=Advanced options
620OpenMsFeatureDetection=OpenMS Feature Detection
621OpenMsFeatureFinderAlgorithmSelect=FeatureFinder algorithm
622OpenMsImportResultsInPipeline=Import results
623OpenMsFeatureFinderFeatureMinRtSpan=feature:min_rt_span
624OpenMsFeatureFinderIsotopicPatternChargeHigh=isotopic_pattern:charge_high
625OpenMsFeatureFinderIsotopicPatternMzTolerance=isotopic_pattern:mz_tolerance
626OpenMsFeatureFinderOptions=FeatureFinder options
627OpenMsOptions=OpenMS options
628OpenMsPeakPickerOptions=PeakPicker options
629OpenMsProgramSelect=OpenMS program[s]
630OpenMsPeakPickerAlgorithmSelect=PeakPicker algorithm
631OpenMsStrategySelect=Strategy
632OpenMsUploadPeakPickerResultsInPipeline=Upload PeakPicker result file when working in pipeline
633OrderBy=Order By
634Organisation=Organisation
635Original=Original
636OriginalQuantityInMicroLiters=Original Quantity (&micro;l)
637OriginalSampleQuantityInMicroLiters=Original Sample Quantity (&micro;l)
638OriginalSearchResults=Original search results
639OtherSettings=Other settings
640Others=Others
641OutputDirectoryName=Output directory name
642OutputFileName=Output filename
643OutputFileNamePrefix=Output filename prefix (optional)
644Output=Output
645Overview=Overview
646Owner=Owner
647Own=Own
648ParameterFile=Parameter File
649Parameters=Parameters
650ParentPeakListSet=Parent peaklistset
651Password=Password
652PasswordChangeRequired=Password change required at first log-in
653PeakListFileName=Peaklist file
654PeakListFile=Peaklist file
655PeakListSet=Peak list set
656PeakListSetsInDatabase=Peak list sets in the database
657PeakListSets=Peak list sets
658PeakLists=Peaklists
659PendingJobs=Pending Jobs
660Pending=Pending
661PeptideCutOff=Peptide cutoff
662PeptideResults=Peptide search results
663PeptideSequence=Peptide Sequence
664percentAcrylAmid=Acrylamide (%)
665PercentAcrylAmid=Acrylamide (%)
666PercentAcrylamide=Acrylamide (%)
667PercentAcrylAmide=Acrylamide (%)
668PercentComplete=Complete (%)
669PerformFeatureDetection=Feature Detection
670PerformMascorSearch=Perform Mascot Search
671PerformOMSSASearch=Perform OMSSA Search
672PerformSpectrumSearch=Spectrum Search
673PerformXTandemSearch=Perform X!Tandem Search
674PermissionDenied=Permission Denied
675Permissions=Permissions
676Personal=Personal
677Phone=Phone
678PiEnd=High pI
679piEnd=High pI boundary
680PIKEFieldSelect=Fields to show (ctrl key for multiple selection)
681PIKEGeneOntologyCheckSelect=Include Gene Ontology exhaustive search (Gene Ontology terms must be selected to be shown)
682PIKEInputFileTypeSelect=Input file type
683PIKEMaxDeepInput=Level of the Gene Ontology deep graphical representation
684PIKEOutputFileTypeSelect=Output file type (ctrl key for multiple selection)
685PIKEParameterSetInput=PIKE - Input
686PIKEParameterSetOutput=PIKE - Output
687PIKESourceDatabaseSelect=Source database
688PIKEUserMailInput=E-mail address
689PIKEUserNameInput=Your name
690Pi=Pi
691PiStart=Low pI
692piStart=Low pI boundary
693PKLFile=PKL File
694PlateExternalId=Plate external ID
695PlateId=Plate ID
696Plate=Plate
697PlateProperties=Plate properties
698PluginClassPath=Plugin class path
699PluginConfiguration=Plugin configuration
700Plugin=Plugin
701PluginDefinition=Plugin Definition
702Plugins=Plugins
703PluginVersion=Plugin version
704Pooled=Pooled
705PoolExtracts=Pool Extracts
706PQPQReport=PQPQ report
707Precursor=Precursor
708PrecursorQuantity=Precursor quantity
709PreferencesMenuItem=Preferences...
710Preferences=Preferences
711PreviousDimensions=Previous separation dimensions
712Previous=Previous
713PreviousSpectrum=Previous spectrum
714PrideExperimentTitle=Experiment title
715PrideExportAfterVersionNumber=XML Export
716PrideExportBtn=PRIDE XML Export
717PrideExportFilterSettings=PRIDE XML Export - Filter Settings
718PrideExportOutput=PRIDE XML Export - Output
719PrideExport=PRIDE XML Export
720PrimaryCombined=Primary in search combination
721Priority=Priority
722Profile=Profile
723Progress=Progress
724ProjectDirectory=Project directory
725ProjectHomeDirectory=Project home directory
726ProjectId=Project ID
727Project=Project
728Projects=Projects
729ProjectType=Project Type
730PropagateFeatureSequences=Propagate Feature Sequences
731PropertiesFor=Properties for
732PropertiesForHitsToDelete=Properties for hits to delete
733Properties=Properties
734Property=Property
735ProtCutOff=Protein FDR cutoff
736ProteinAccession=Protein accession number
737proteinAssay=Protein Assay
738ProteinAssay=Protein Assay
739ProteinAssembly=Protein Assembly
740Protein=Protein
741ProteinResults=Protein search results
742ProteomeXchangeExport=ProteomeXchange Submission Summary File Export
743ProteomeXchangeExportExpoorimentTitle=Experiment title
744ProteomeXchangeExportFileTypeInput=ProteomeXchange File Export - Types of files to include
745ProteomeXchangeExportFilterSettings=ProteomeXchange File Export - Filter Settings
746ProteomeXchangeExportMenuItem=ProteomeXchange
747ProteomeXchangeExportMetaDataInput=ProteomeXchange File Export - Metadata
748ProteomeXchangeExportOutput=ProteomeXchange File Export - Output
749ProtocolFile=Protocol File
750protocol=Protocol
751Protocol=Protocol
752Protocols=Protocols
753ProtocolType=Protocol Type
754ProtocolType=Protocol Type
755PutJobInHighPriorityQueue=Put job in high priority queue
756QuantifyUsingUniqueOnly=Unique peptides only
757Queue=Queue
758Queues=Queues
759QuantitationSettings=Settings for isobaric label quantification
760QuantityInMicroLiters=Quantity (&micro;l)
761Quantity=Quantity
762QuickImport=Quick Import
763QuotaTypeSystemId=Quota type
764RandomHitsPrefix=Decoy hits prefix
765Ratio=Ratio
766RatioOfHitSelectionMeanValues=Ratio (mean(HS1)/mean(HS2))
767ReadOnlyForm=Read-Only Form
768Read=Read
769RecentProjects=Recent Projects
770ReferenceIdx=Index of reference
771Refresh=Refresh
772ReleaseDate=Release Date
773RemainingJobs=Remaining Jobs
774RemainingQuantityInMicroLiters=Remaining Quantity (&micro;l)
775Remaining=Remaining
776RemainingSampleQuantityInMicroLiters=Remaining Sample Quantity (&micro;l)
777Removed=Removed
778ReplicateId=Replicate ID
779ReplicateIdOptional=Replicate ID (optional)
780ReplicateWise=Per replicate
781Reports=Reports
782ReportTools=Report Tools
783ResetProtocolFile=Reset Protocol File
784ResolutionMethod=Resolution Method
785Resolution=Resolution
786ResolutionType=Resolution Type
787Restore=Restore
788Result=Result
789ResultFile=Result File
790RetentionTimeInMinutesDelta=RT delta (min)
791RetentionTimeInMinutes=Retention time (min)
792RetrieveProteinInfo=Retrieve protein info
793RMSError=RMS Error
794Role=Role
795Roles=Roles
796RootDirectory=Root Directory
797RootHome=Root Home
798RootMeanSquareError=RMS Error
799Root=Root
800RunExtension=Run extension
801RunImportPlugin=Run import plugin
802RunPlugin=Run plugin
803SampleBatch=Sample batch
804SampleComment=Sample comment
805SampleConcentrationInGramsPerLiter=Sample concentration (g/l)
806SampleExternalId=Sample external ID
807SampleInfo=Sample information
808SampleMassInGrams=Sample mass (g)
809SampleName=Sample name
810SampleNumber=Sample number
811SampleQuantityInMicroLiters=Sample Quantity (&micro;l)
812Sample=Sample
813Samples=Samples
814SampleState=Sample state
815SampleVolumeInMilliliters=Sample volume (ml)
816SaveAndSearchMascot=Save and Search Mascot
817SaveAndSearchOMSSA=Save and Search OMSSA
818SaveAndSearchXTandem=Save and Search X!Tandem
819SaveAndSearchXTandemUsingLocalInstallation=Save and Search X!Tandem using Local Installation
820SaveAsAndSearchMascot=Save As... and Search Mascot
821SaveAsAndSearchOMSSA=Save As... and Search OMSSA
822SaveAsAndSearchXTandem=Save As... and Search X!Tandem
823SaveAsOMSSAParameterSetStorage=Save OMSSA Parameter Set
824SaveAs=Save As...
825SaveAsXTandemParameterSetStorage=Save X!Tandem Parameter Set
826SaveInFile=Save in File
827SaveProperties=Save properties
828Save=Save
829ScanRate=Scan Rate
830Score=Score
831ScoreType=Score Type
832ScoreTypeSettings=Settings for score type
833Search=Search
834SearchDatabases=Search database(s)
835SearchDate=Searched
836SearchEngine=Search Engine
837Searches=Searches
838SearchModifications=Search Modifications
839SearchOMSSA=Search OMSSA
840SearchOMSSAUsingLocalInstallation=Search OMSSA using local installation
841SearchOMSSAViaWebInterface=Search OMSSA via web interface
842SearchResults=Search results
843SearchSetup=Search Setup
844SearchXTandem=Search X!Tandem
845SearchXTandemUsingLocalInstallation=Search X!Tandem using local installation
846SearchXTandemViaWebInterface=Search X!Tandem via web interface
847SelectFileType=Select File Type
848SelectFractionIdEntryMode=Fraction ID input:
849SelectLocalSampleId=Select existing local sample ID:
850SelectLocalSampleIdEntryMode=Local sample ID input:
851SelectMascotParameterSetStorage=Select Mascot Parameter Set
852SelectMascotParameterTemplateFile=Select File to copy Mascot Parameters from
853SelectMascotResultRetrievalParameters=Select Mascot result retrieval parameters
854SelectMascotSearchSpectrumFiles=Mascot Search - Select Spectrum File[s]
855SelectMethod=Select method
856SelectMimeType=Select MIME type
857SelectMsInspectSearchSpectrumFiles=Select msInspect Spectrum File[s]
858SelectOMSSAParameterSetStorage=Select OMSSA Parameter Set
859SelectOMSSAParameterTemplateFile=Select File to copy OMSSA Parameters from
860SelectOMSSASearchSpectrumFiles=OMSSA Search - Select Spectrum File[s]
861SelectOpenMsSearchSpectrumFiles=Select OpenMS Spectrum File[s]
862SelectPIKEParameterSet=Select PIKE Parameter Set
863SelectPlugin=Select plugin
864SelectPrideProtocolFile=Select File to copy PRIDE XML protocol block from (Optional)
865SelectProject=Select project
866SelectProteomeXchangeIncludeFiles=Select include file[s] for ProteomeXchange Export
867SelectProteomeXchangeOtherFiles=Select other file[s] for ProteomeXchange Export
868SelectProteomeXchangePeaklistFiles=Select peaklist file[s] for ProteomeXchange Export
869SelectProteomeXchangePrideXmlFiles=Select PRIDE XML file[s] for ProteomeXchange Export
870SelectProteomeXchangeRawFiles=Select raw file[s] for ProteomeXchange Export
871SelectProteomeXchangeResultFiles=Select result file[s] for ProteomeXchange Export
872SelectProteomeXchangeSearchFiles=Select search file[s] for ProteomeXchange Export
873SelectProtocolFile=Select Protocol File
874SelectReplicateIdEntryMode=Replicate ID input:
875SelectSpectrumFile=Select Spectrum File
876SelectVisibleColumns=Select Visible Columns
877SelectXTandemParameterSetStorage=Select X!Tandem Parameter Set
878SelectXTandemParameterTemplateFile=Select File to copy X!Tandem Parameters from
879SelectXTandemSearchSpectrumFiles=X!Tandem Search - Select Spectrum File[s]
880SelectXTandemSpectrumFile=Select X!Tandem Spectrum File
881SeparationEvent=Separation Event
882SeparationMethod=Separation Method
883SeparationMethods=Separation Methods
884SessionAttributes=Session Attributes
885Sequence=Sequence
886ServerDescription=Server description
887ServerInformation=Server Information
888Server=Server
889SettingsForExport=Settings for the export
890SettingsForHitReportFile=Settings for the hit report file
891SettingsForReport=Settings for the report
892Settings=Settings
893Shared=Shared
894ShareRecursivley=Share recursively
895Share=Share
896SharingPermissions=Sharing Permissions
897ShowGels=Show Gels
898Show=Show
899SignalToNoiseRatio=S/N
900SizeInBytes=Size (bytes)
901Size=Size
902sizeXInCentiMeters=X size (cm)
903SizeXInCentiMeters=X size (cm)
904sizeYInCentiMeters=Y size (cm)
905SizeYInCentiMeters=Y size (cm)
906SlowJobQueue=Slow
907SmtpHostProteiosConfig=SMTP Host (in proteios.config)
908SmtpHost=SMTP Host
909solubilizationBuffer=Solubilization Buffer
910SolubilizationBuffer=Solubilization Buffer
911SourceInformation=Source Information
912SpeciesOntology= Species ontology
913SpeciesAccession= Species accession
914SpeciesName= Species name
915Specificity=Specificity
916SpectrumFileContactInput=Contact - Input
917SpectrumFileContactOutput=Contact - Output
918SpectrumFileSampleInput=Sample - Input
919SpectrumFileSampleOutput=Sample - Output
920SpectrumFile=Spectrum File
921SpectrumId2=Spectrum Id
922SpectrumId3=Spectrum id
923SpectrumIdOrderNumber2=Spectrum Id (order #)
924SpectrumIdOrderNumber3=Spectrum id (order #)
925SpectrumIdOrderNumber=Spectrum ID (order #)
926SpectrumId=Spectrum ID
927SpectrumIteration=Spectrum iteration
928SpectrumMassCutoffHigh=Upper (m/z)
929SpectrumMassCutoffLow=Lower (m/z)
930SpectrumMassRangeSelection=Spectrum mass range
931SpectrumSearchesInDatabase=Spectrum searches in the database
932SpectrumSearches=Spectrum searches
933SpectrumSearchs=Spectrum searches
934SpectrumSearch=Spectrum identification result
935Spectrum=Spectrum
936SpectrumStringId=Spectrum ID (string)
937SpotId=Spot ID
938Spot=Spot
939SpotXPixel=SpotXPixel
940SpotYPixel=SpotYPixel
941StartDate=Start Date
942Started=Started
943StartHere=Start Here
944StartRetentionTimeInMinutes=Start retention time (min)
945StartTimeToleranceMinutes=Start retention time tolerance (min)
946Start=Start
947StatusMessage=Status Message
948Status=Status
949StorageLocation=Storage Location
950StoredInCompressedFormat=Stored in compressed format
951Supervisor=Supervisor
952SystemId=System ID
953SystemItem=System Item
954TableOptions=Table Options
955TablePreferencesConfiguration=Table Preferences Configuration
956TablePreferencesMode=Save table preferences:
957TablePreferencesReset=Reset table preferences
958TheoreticalMolecularMassInDaltons=Theoretical molecular mass (Da)
959TheoreticalPi=Theoretical pI
960TimeLoggedInHHMMSS=Time logged in (hh:mm:ss)
961TimeSinceLastAccessHHMMSS=Time since last access (hh:mm:ss)
962Title=Title
963ToAddress=To (address)
964TotalIntensity=Total Intensity
965TotalPeaks=Total Peaks
966Trashcan=Trashcan
967TrashProject=Delete
968Trash=Trash
969TransparentCompression=Transparent compression
970TTestPValue=t-test p-value
971Type=Type
972UniformResourceIdentifier=URI
973UniqueSequences=Unique sequences
974UnsupportedFileType=Unsupported File Type
975Update=Update
976UploadDemoFiles=Upload demo files
977UploadFile=Upload file
978URI=URI
979Url=URL
980URL=URL
981UseAsProtocol=Use as protocol
982UseCombinedFDR=Use combined FDR
983UsedExtractAvailable=Used extract (available
984UsedExtract=Used Extract
985UsedLabeledExtractAvailable=Used labeled extract (available
986UsedLabeledExtract=Used Labeled Extract
987UseProteinFDR=Use protein FDR filter
988UsedQuantityInMicroLiters=Used Quantity (&micro;l)
989UsedQuantity=Used Quantity (&micro;l)
990UsedSampleAvailable=Used sample (available
991UsedSampleQuantityInMicroLiters=Used Sample Quantity (&micro;l)
992UsedSample=Used Sample
993Used=Used
994UseFileAsProtocol=Use file as protocol
995UseInProject=Use in project
996UseNotification=Use notification
997UseProteiosSeFilePathInPxFile=Use Proteios SE file paths in PX file
998Username=Username
999Users=Users
1000User=User
1001Use=Use
1002ValidationSettings=Settings for statistical filtering
1003Value=Value
1004Vendor=Vendor
1005VerifyPassword=Verify password
1006VersionIdentifier=Version Identifier
1007VersionString=Version String
1008Version=Version
1009ViewImageFile=View image file
1010ViewOrDownload=View/Download
1011ViewProtocolFile=View Protocol File
1012ViewProtocol=View Protocol
1013ViewTrash=View Trash
1014View=View
1015Warning=Warning
1016WellPosition=Well position
1017Well=Well
1018Wizard=Wizard
1019Write=Write
1020X!TandemParameterSet=X!Tandem parameter set
1021XTandemImportResults=Import results
1022XTandemListPathDefaultParameters=Default parameters
1023XTandemListPathTaxonomyInformation=Taxonomy information
1024XTandemOutputHistogramColumnWidth=Histogram column width
1025XTandemOutputHistograms=Histograms
1026XTandemOutputLogPath=Log path
1027XTandemOutputMaximumValidExpectationValue=Maximum valid expectation value
1028XTandemOutputMessage=Message
1029XTandemOutputOneSequenceCopy=One sequence copy
1030XTandemOutputParameters=Parameters
1031XTandemOutputPathHashing=Path hashing
1032XTandemOutputPath=Path
1033XTandemOutputPerformance=Performance
1034XTandemOutputProteins=Proteins
1035XTandemOutputResults=Results
1036XTandemOutputSequencePath=Sequence path
1037XTandemOutputSequences=Sequences
1038XTandemOutputSortResultsBy=Sort results by
1039XTandemOutputSpectra=Spectra
1040XTandemOutputXslPath=XSL path
1041XTandemParameterFile=X!Tandem Parameters File
1042XTandemParameterSetAdditionalOptionsNotInParameterSet=X!Tandem - Additional Options not in Parameter Set
1043XTandemParameterSetListPath=List path
1044XTandemParameterSetOutput=Output
1045XTandemParameterSetProtein=Protein
1046XTandemParameterSetRefine=Refine
1047XTandemParameterSetResidue=Residue
1048XTandemParameterSetScoring=Scoring
1049XTandemParameterSetsInDatabase=X!Tandem parameter sets in database
1050XTandemParameterSetSpectrum=Spectrum
1051XTandemParameterSetStandardSettings=Standard Settings
1052XTandemParameterSetStorage=X!Tandem parameter sets
1053XTandemParameterSetStorageProperties=X!Tandem Parameter Set Storage Properties
1054XTandemParameterSets=X!Tandem parameter sets
1055XTandemParameterSet=X!Tandem parameter set
1056XTandemParameterTemplateFile=X!Tandem Parameters Template File
1057XTandemProteinCleavageCTerminalMassChange=Cleavage C-terminal mass change
1058XTandemProteinCleavageNTerminalMassChange=Cleavage N-terminal mass change
1059XTandemProteinCleavageSite=Cleavage site
1060XTandemProteinCleavageSiteEnter=or specify own
1061XTandemProteinCleavageSiteSelect=Select cleavage site
1062XTandemProteinCTerminalResidueModificationMass=C-terminal residue modification mass
1063XTandemProteinHomologManagement=Homolog management
1064XTandemProteinModifiedResidueMassFile=Modified residue mass file
1065XTandemProteinNTerminalResidueModificationMass=N-terminal residue modification mass
1066XTandemProteinTaxonEukaryotes=Taxon - Eukaryotes
1067XTandemProteinTaxonProkaryotes=Taxon - Prokaryotes
1068XTandemProteinTaxon=Taxon
1069XTandemRefineMaximumValidExpectationValue=Maximum valid expectation value
1070XTandemRefineModificationMassEnter=or specify own
1071XTandemRefineModificationMass=Modification mass
1072XTandemRefineModificationMassSelect=Select modification mass
1073XTandemRefinePointMutations=Point mutations
1074XTandemRefinePotentialCTerminusModifications=Potential C-terminus modifications
1075XTandemRefinePotentialModificationMassEnter=or specify own
1076XTandemRefinePotentialModificationMass=Potential modification mass
1077XTandemRefinePotentialModificationMassSelect=Select modification mass
1078XTandemRefinePotentialModificationMotif=Potential modification motif
1079XTandemRefinePotentialNTerminusModifications=Potential N-terminus modifications
1080XTandemRefine=Refine
1081XTandemRefineSequencePath=Sequence path
1082XTandemRefineSpectrumSynthesis=Spectrum synthesis
1083XTandemRefineTicPercent=Tic  percent
1084XTandemRefineUnanticipatedCleavage=Unanticipated cleavage
1085XTandemRefineUsePotentialModificationsForFullRefinement=Use potential modifications for full refinement
1086XTandemResidueModificationMassEnter=or specify own
1087XTandemResidueModificationMass=Modification mass
1088XTandemResidueModificationMassSelect=Select modification mass
1089XTandemResiduePotentialModificationMassEnter=or specify own
1090XTandemResiduePotentialModificationMass=Potential modification mass
1091XTandemResiduePotentialModificationMassSelect=Select potential modification mass
1092XTandemResiduePotentialModificationMotif=Potential modification motif
1093XTandemScoringAIons=A ions
1094XTandemScoringAlgorithm=Algorithm
1095XTandemScoringBIons=B ions
1096XTandemScoringCIons=C ions
1097XTandemScoringCyclicPermutation=Cyclic permutation
1098XTandemScoringIncludeReverse=Include reverse
1099XTandemScoringMaxMissedCleavageSites=Maximum missed cleavage sites
1100XTandemScoringMinIonCount=Minimum ion count (set to 1 for "k-score" scoring algorithm)
1101XTandemScoringXIons=X ions
1102XTandemScoringYIons=Y ions
1103XTandemScoringZIons=Z ions
1104X!TandemSearchSetup=X!Tandem Search Setup
1105XTandemSpectrumDynamicRange=Dynamic range
1106XTandemSpectrumFile=X!Tandem Spectrum File
1107XTandemSpectrumFragmentMassType=Fragment mass type
1108XTandemSpectrumFragmentMonoisotopicMassError=Fragment monoisotopic mass error
1109XTandemSpectrumFragmentMonoisotopicMassErrorUnits=Fragment monoisotopic mass error units
1110XTandemSpectrumMaximumParentCharge=Maximum parent charge
1111XTandemSpectrumMaximumParentMPlusH=Maximum parent m+h
1112XTandemSpectrumMinimumFragmentMz=Minimum fragment mz
1113XTandemSpectrumMinimumParentMPlusH=Minimum parent m+h
1114XTandemSpectrumMinimumPeaks=Minimum peaks
1115XTandemSpectrumParentMonoisotopicMassErrorMinus=Parent monoisotopic mass error minus
1116XTandemSpectrumParentMonoisotopicMassErrorPlus=Parent monoisotopic mass error plus
1117XTandemSpectrumParentMonoisotopicMassErrorUnits=Parent monoisotopic mass error units
1118XTandemSpectrumParentMonoisotopicMassIsotopeError=Parent monoisotopic mass isotope error
1119XTandemSpectrumPath=Spectrum path
1120XTandemSpectrumSequenceBatchSize=Sequence batch size
1121XTandemSpectrumThreads=Threads
1122XTandemSpectrumTotalPeaks=Total peaks
1123XTandemSpectrumUseNoiseSuppression=Use noise suppression
1124XTandem=X!Tandem
1125yes=yes
1126Yes=Yes
1127YourSession=Your Session
1128ZoomedAndOriginalSpectrum=Zoomed and original spectrum
1129ZoomedSpectrum=Zoomed spectrum
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