source: trunk/client/servlet/www/WEB-INF/init.sh @ 4084

#!/bin/sh

# $Id: init.sh 4084 2010-12-20 12:40:56Z olle $

#  Copyright (C) 2009 Gregory Vincic

#  Files are copyright by their respective authors. The contributions to
#  files where copyright is not explicitly stated can be traced with the
#  source code revision system.

#  This file is part of Proteios.
#  Available at http://www.proteios.org/

#  Proteios is free software; you can redistribute it and/or
#  modify it under the terms of the GNU General Public License
#  as published by the Free Software Foundation; either version 2
#  of the License, or (at your option) any later version.

#  Proteios is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#  GNU General Public License for more details.

#  You should have received a copy of the GNU General Public License
#  along with this program; if not, write to the Free Software
#  Foundation, Inc., 59 Temple Place - Suite 330,
#  Boston, MA  02111-1307, USA.

# Configuration script that should be used after istallation. (rpm only)

. ./config


stty -echo
read -p "Mysql password for user $DB_MANAGER: " DB_MANAGER_PWD; echo
SQL_EXEC="mysql -h $DB_HOST -u $DB_MANAGER -p$DB_MANAGER_PWD -e"
DB_EXISTS=`$SQL_EXEC "show databases" | grep "^$DB_NAME\$"`
if [ "$DB_EXISTS" == "$DB_NAME" ]; then
  echo "Database '$DB_NAME' already exists. Change DB_NAME in config file and try again."
  stty echo
  exit
fi

read -p "Proteios SE password for root: " APP_ROOT_PWD; echo
stty echo
HOST_NAME=`java -jar lib/GetHostName.jar`


# Create database and user
$SQL_EXEC "CREATE DATABASE IF NOT EXISTS \`$DB_NAME\` DEFAULT CHARACTER SET utf8;"
$SQL_EXEC "GRANT ALL ON \`$DB_NAME\`.* TO '$APP_USER'@'$DB_HOST' IDENTIFIED BY '$APP_USER_PWD'; FLUSH PRIVILEGES;"

# Update proteios web.xml file (used by Tomcat)
java -jar lib/Replace.jar \
                web.xml.in web.xml \
                __TEMPFILES__="$TEMP_FILES_DIR"

cd classes
java -jar ../lib/Replace.jar \
                proteios.config.in proteios.config \
                __USERNAME__=$APP_USER \
                __PASSWORD__=$APP_USER_PWD \
                __DATABASE__=$DB_NAME \
                __USERFILES__="$USER_FILES_DIR" \
                __HOST__=$DB_HOST \
                __SMTPHOST__=$MAIL_SERVER \
                __MAIL_FROM_ADDRESS__=$MAIL_FROM_ADDRESS


# Update proteios ftp.properties file (used by FTP Server)
java -jar ../lib/Replace.jar \
                ftp.properties.in ftp.properties \
                __CONTROL_PORT__=$FTP_CONTROL_PORT \
                __PASSIVE_PORT_RANGE__=$FTP_PASSIVE_PORT_RANGE \
                __USERNAME__=$APP_USER \
                __PASSWORD__=$APP_USER_PWD \
                __DATABASE__=$DB_NAME \
                __USERFILES__="$USER_FILES_DIR" \
                __HOST__=$DB_HOST

# Create proteios xtandem.properties file if not existing.
if [ ! -f xtandem.properties ]; then
  cp -p xtandem.properties.in xtandem.properties
fi

# Create proteios mascot.properties file if not existing.
if [ ! -f mascot.properties ]; then
  cp -p mascot.properties.in mascot.properties
fi

# Create proteios omssa.properties file if not existing.
if [ ! -f omssa.properties ]; then
  cp -p omssa.properties.in omssa.properties
fi

# Create proteios pike.properties file if not existing.
if [ ! -f pike.properties ]; then
  cp -p pike.properties.in pike.properties
fi

# Create proteios msinspect.properties file if not existing.
if [ ! -f msinspect.properties ]; then
  cp -p msinspect.properties.in msinspect.properties
fi

# Create proteios log4j.properties file if not existing.
if [ ! -f log4j.properties ]; then
  cp -p log4j.properties.in log4j.properties
fi

# Update proteios Proteios FTP Server start script
java -jar ../lib/Replace.jar \
                $SERVICE_PATH/proteios_ftp_server.sh.in $SERVICE_PATH/proteios_ftp_server.sh \
                __CATALINA_HOME__="$CATALINA_HOME" \
                __FTP_CONTROL_PORT__=$FTP_CONTROL_PORT \
                __TEMP_FILES_DIR__=$TEMP_FILES_DIR

# End configuration replacements
cd ..

# Build classpath
CP=classes
for i in `ls lib/*.jar`; do CP=${CP}:${i}; done

# Create user files directory if not existing.
mkdir -p "$USER_FILES_DIR/conf"
chown $TOMCAT_USER -R $USER_FILES_DIR
chgrp $TOMCAT_GROUP -R $USER_FILES_DIR

# Create temporary files directory if not existing.
mkdir -p "$TEMP_FILES_DIR"
chown $TOMCAT_USER -R $TEMP_FILES_DIR
chgrp $TOMCAT_GROUP -R $TEMP_FILES_DIR

# Initialize database
java -server -cp $CP org.proteios.install.InitDB $APP_ROOT_PWD


if [ -e $SERVICE_PATH/proteios_ftp_server.sh ]; then
  chmod ugo+x $SERVICE_PATH/proteios_ftp_server.sh
else
  echo "warning: $SERVICE_PATH/proteios_ftp_server.sh is missing"
fi