Changeset 3761

Timestamp:

Aug 9, 2010, 10:25:55 AM (13 years ago)

Author:

Fredrik Levander

Message:

Fixes #672. Updated help text

File:

• trunk/client/servlet/src/org/proteios/action/hit/ProteinAssembly1.java (modified) (5 diffs)

trunk/client/servlet/src/org/proteios/action/hit/ProteinAssembly1.java

@@ -95 +95 @@
     isProteinCB.setLabel("FileWise");
     isProteinCB.setValue("true");
+    isProteinCB.setHelp("Per peaklist file report");
     properties.add(isProteinCB);
     Checkbox<VBoolean> isOccamCB = new Checkbox<VBoolean>(
@@ -100 +101 @@
     isOccamCB.setLabel("OccamsRazor");
     isOccamCB.setValue("true");
+    isOccamCB.setHelp("Remove subsequence proteins");
     isOccamCB.isChecked(true);
     properties.add(isOccamCB);
@@ -109 +111 @@
     isFDR.setLabel("UseCombinedFDR");
     isFDR.setValue("true");
+    isFDR.setHelp("Peptide level setting");
     TextField<Float> fdrF = new TextField<Float>(
       CreateProteinAssemblyJob.VCUTOFF);
     fdrF.setValue(new Float(0.01));
     fdrF.setLabel("PeptideCutOff");
+    fdrF.setHelp("FDR or e-value cutoff");
     validation.add(isFDR);
     validation.add(fdrF);
@@ -164 +168 @@
     tolF.setValue(new Float(0.15));
     tolF.setLabel("MatchTolerance");
+    tolF.setHelp("Tolerance when matching reporters");
     quantFS.add(tolF);
     TextField<Integer> idxF = new TextField<Integer>(
@@ -181 +186 @@
     String instruction = "The report will be generated by finding protein groups for peptides that pass the peptide cutoff.";
     instruction += " If the search results combination has been performed, the peptide combined FDR can be used as cutoff, otherwise max E-value can be used.";
-    instruction += " The report can be filtered based on protein FDR if decoy peptides are present (search in target-decoy database and decoys kept in combined hits report are the rquirements).";
+    instruction += " The report can be filtered based on protein FDR if decoy peptides are present (search in target-decoy database and decoys kept in combined hits report are the requirements).";
     instruction += " Select whether to find proteins globally or per file or per sample. Also select whether peptide sequences should be counted once per unique";
     instruction += " Set the minimum nuber of peptides to the required number of significant peptides per protein.";