Changeset 4073

Timestamp:

Dec 15, 2010, 3:00:05 PM (12 years ago)

Author:

olle

Message:

Refs #668. Refs #287. First version of support for running msInspect feature finding from Proteios SE:

1. New class/file action/file/UseSpectrumFileForMsInspectSearchExtension.java in client/servlet/ added. It implements interface ContextEnabled through class FileContext. List of id values for selected spectrum files are added as hidden fields to the form, and a button is displayed that is coupled to an action link to new class RunMsInspect.

2. New class/file action/msInspect/RunMsInspect.java in client/servlet/ added. It retrieves a list of id values for spectrum files from valid parameter VInteger VSPECTRUMFILEID and settings from msInspect properties file msinspect.properties, after which it creates one job for each spectrum file managed by new plug-in class RunMsInspectPlugin.

3. New class/file plugins/RunMsInspectPlugin.java in plugin/ added. It copies the spectrum input file to a temporary file with a time stamp in the file name to the temp folder, and then ruins the msInspect program on the latter file. It attempts to upload the result file, after which it deletes the created temporary files (if uploading the result file was unsuccessful, this file is kept for manual upload).

4. English dictionary file locale/en/dictionary in client/servlet/ updated with new string keys.

Location:

trunk

Files:

• client/servlet/src/locale/en/dictionary (modified) (2 diffs)
• client/servlet/src/org/proteios/action/file/UseSpectrumFileForMsInspectSearchExtension.java (added)
• client/servlet/src/org/proteios/action/msInspect/RunMsInspect.java (added)
• plugin/src/org/proteios/plugins/RunMsInspectPlugin.java (added)

trunk/client/servlet/src/locale/en/dictionary

@@ -423 +423 @@
 Move=Move
 MsFile=MS File
+MsInspect=msInspect
+MsInspectFeatureFinding=msInspect Feature Finding
+MsInspectSearch=msInspect Search
 MwInDaltons=Molecular weight (Da)
 MyFiles=My Files
@@ -461 +464 @@
 NextMascotEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search
 Next=Next
+NextMsInspectCreateSearchJobs=Next - Create search job[s]
 NextOMSSACreateSearchJobs=Next - Create search job[s]
 NextOMSSAEditParametersBeforeCreatingSearchJobs=Next - Edit parameters before search