Changeset 4076

Timestamp:

Dec 16, 2010, 10:02:54 AM (12 years ago)

Author:

olle

Message:

Refs #668. Class/file plugins/RunMsInspectPlugin.java in plugin/ updated by not including a time stamp in the uploaded msInspect result file:

1. Private method void msInspectSearchLocal(Request request, Response response, ...) updated by not including a time stamp in the uploaded msInspect result file.

File:

• trunk/plugin/src/org/proteios/plugins/RunMsInspectPlugin.java (modified) (3 diffs)

trunk/plugin/src/org/proteios/plugins/RunMsInspectPlugin.java

@@ -503 +503 @@
       // Test output filename excluding original file extension in name
       String testOutputFilename = msInspectInputBaseFilename + ".peptides.tsv";
+      // Construct filename to use for uploaded result file
+      // Example: Spectrum file sample.mzXML gets result file sample.peptides.tsv
+      String filenameOfUploadedFile = spectrumBaseFilename + ".peptides.tsv";
       if (localFileCanBeRead(tmpDir, testOutputFilename))
       {
@@ -511 +514 @@
         // Test output filename including original file extension in name
         testOutputFilename = msInspectInputFilename + ".peptides.tsv";
+        // Construct filename to use for uploaded result file
+        // Example: Spectrum file sample.mzml gets result file sample.mzml.peptides.tsv
+        filenameOfUploadedFile = originalSpectrumFilename + ".peptides.tsv";
         if (localFileCanBeRead(tmpDir, testOutputFilename))
         {
@@ -543 +549 @@
           try
           {
-            // Construct filename to use for uploaded result file
-            String filenameOfUploadedFile = new String(msInspectOutputFilename);
             log.debug("filenameOfUploadedFile = \"" + filenameOfUploadedFile + "\"");
             uploadMsInspectOutputFile(tmpDir,