Changeset 4077

Timestamp:

Dec 16, 2010, 12:02:44 PM (12 years ago)

Author:

olle

Message:

Refs #668. Class/file action/file/UseSpectrumFileForMsInspectSearchExtension.java in client/servlet/ updated in displayed instruction text, as the uploaded msInspect result file now does not include an extra time stamp in the filename:

1. Protected method void runMe() updated in the displayed instruction text.

File:

• trunk/client/servlet/src/org/proteios/action/file/UseSpectrumFileForMsInspectSearchExtension.java (modified) (1 diff)

trunk/client/servlet/src/org/proteios/action/file/UseSpectrumFileForMsInspectSearchExtension.java

@@ -104 +104 @@
     instruction += "<BR>";
     instruction += " 1. Base filename of the spectrum file (filename without file extension)<BR>";
-    instruction += " 2. + time stamp in _YYYY_MM_DD_hh_mm_ss format<BR>";
-    instruction += " 3. + \".peptides.tsv\"<BR>";
+    instruction += " 2. + \".peptides.tsv\"<BR>";
     instruction += "<BR>";
-    instruction += "Example: Results for spectrum file \"sample.mzXML\" analyzed 2010-12-14 17:05:56";
-    instruction += " are stored in result file \"sample_2010_12_14_17_05_56.peptides.tsv\".";
-    instruction += " The time stamp is the time the job was created, not when it was executed.";
-    instruction += " This has the effect that result files for jobs created in the same batch";
-    instruction += " will share the same time stamp in the filenames.<BR>";
+    instruction += "Example: Results for spectrum file \"sample.mzXML\"";
+    instruction += " are stored in result file \"sample.peptides.tsv\".<BR>";
     instruction += "<BR>";
     instruction += "Note: In some cases msInspect keeps the original file extension as part of";
     instruction += " the result file name, e.g. \"sample.mzml\" gets result file";
-    instruction += " \"sample_2010_12_14_17_05_56.mzml.peptides.tsv\".";
+    instruction += " \"sample.mzml.peptides.tsv\".<BR>";
+    instruction += "<BR>";
+    instruction += "If the result file could not be automatically uploaded to Proteios SE,";
+    instruction += " it has to be uploaded manually from the temp folder. The result file";
+    instruction += " of interest has an extra time stamp in _YYYY_MM_DD_hh_mm_ss format";
+    instruction += " added to the base filename of the spectrum file.";
+    instruction += " The time stamp is the time the job was created, not when it was executed.";
+    instruction += " Example: Results for spectrum file \"sample.mzXML\" analyzed 2010-12-14 17:05:56";
+    instruction += " are stored in temporary file \"sample_2010_12_14_17_05_56.peptides.tsv\".";
     instructionArea.setContent(instruction);
     instructionArea.setTitle("Description");