Changeset 4268

Timestamp:

Dec 13, 2011, 10:43:49 AM (12 years ago)

Author:

Fredrik Levander

Message:

Refs #637. Updated TraML export to 1.0.0

File:

• trunk/plugin/src/org/proteios/plugins/ExclusionListFromHits.java (modified) (4 diffs)

trunk/plugin/src/org/proteios/plugins/ExclusionListFromHits.java

@@ -89 +89 @@
   private static final String XCALIBUR = "Xcalibur mass";
   private static final String XCALIBUR_MZ = "Xcalibur m/z";
-  private static final String TRAML = "traML inclusion";
+  private static final String TRAML = "TraML inclusion";
   private static final Double MONOISTOPIC_PROTON_MASS = 1.007276035;
   private double maxmass = 4000;
@@ -122 +122 @@
     return new AboutImpl(
       "Exclusion list from peptide identifications",
-      "Generate an LC-MS/MS exclusion list from hits which pass a certain score limit. ",
-      "1.1.1", "2009-2010, Lund University", null, null,
+      "Generate an LC-MS/MS exclusion or inclusion list from hits which pass a certain score limit. ",
+      "1.2", "2009-2011, Lund University", null, null,
       "http://www.proteios.org  ");
   }
@@ -186 +186 @@
   protected String getSuccessMessage()
   {
-    return "Exclusion list written: " + outfile;
+    return "List written to: " + outfile;
   }
 
@@ -495 +495 @@
   {
     output
-      .write("<TraML version=\"0.9.4\" xsi:schemaLocation=\"http://psi.hupo.org/ms/traml TraML0.9.3.xsd\" ");
+      .write("<TraML version=\"1.0.0\" xsi:schemaLocation=\"http://psi.hupo.org/ms/traml TraML1.0.0.xsd\" ");
     output
       .write("xmlns=\"http://psi.hupo.org/ms/traml\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\">\n");