Changeset 4510

Timestamp:

Aug 15, 2013, 3:38:23 PM (10 years ago)

Author:

Fredrik Levander

Message:

Refs #807. Exchanged ontology term for m/z in PRIDE output.

File:

• trunk/plugin/src/org/proteios/plugins/PrideExportPlugin.java (modified) (2 diffs)

trunk/plugin/src/org/proteios/plugins/PrideExportPlugin.java

@@ -3764 +3764 @@
       else if (line.contains("name=\"MassToChargeRatio\""))
       {
-        nameString = "m/z";
+        nameString = "selected ion m/z";
       }
       else if (line.contains("name=\"ChargeState\""))
@@ -3804 +3804 @@
           // Get accession number by removing end part of cut line
           accString = tmpLine.substring(0, accEndIndex);
+          if (accString.equals("1000040"))
+          {
+            accString = "1000744";
+          }
         }
       }