Changeset 4535 for trunk/api/core/conf/common-queries.xml

Timestamp:

Nov 22, 2013, 4:39:31 PM (10 years ago)

Author:

Fredrik Levander

Message:

Refs #819. Adding support for matching low-confidence identifications to features in presence of high-scoring hits with same sequence. Setting clusterIds for features with sequence (same cluster id for same sequence and charge).

File:

• trunk/api/core/conf/common-queries.xml (modified) (1 diff)

trunk/api/core/conf/common-queries.xml

@@ -255 +255 @@
     </description>
   </query>
+
+  <query id="GET_UNIQUE_PEPTIDE_SEQUENCES_BELOW_FDR_IN_HITS_FOR_PROJECT" type="HQL">
+    <sql>
+      SELECT DISTINCT h.description
+      FROM HitData h
+      WHERE h.project = :project AND h.protein = false AND h.combinedFDR &lt;= :combinedFDR
+      ORDER by h.description 
+    </sql>
+    <description>
+      Load all distinct (unique) peptide sequences in the Hits table for a project.
+    </description>
+  </query>
   
   <query id="GET_UNIQUE_CHARGES_IN_HITS_FOR_PROJECT" type="HQL">