Changeset 4550

Timestamp:

Mar 6, 2014, 5:20:11 PM (9 years ago)

Author:

Fredrik Levander

Message:

Added sulfo modification

File:

• trunk/api/core/src/org/proteios/core/Modification.java (modified) (4 diffs)

trunk/api/core/src/org/proteios/core/Modification.java

@@ -255 +255 @@
         retval = "Phospho";
       }
+      else if (delta.startsWith("79.95"))
+      {
+        retval = "Sulfo";
+      }
       else if (delta.startsWith("42.01"))
       {
@@ -296 +300 @@
     modMap.put("Carbamidomethyl", "MOD:01214");
     modMap.put("Phospho", "MOD:00696");
+    modMap.put("Sulfo", "MOD:00181");
     modMap.put("Oxidation", "MOD:00412");
     modMap.put("Acetyl", "MOD:00394");
@@ -308 +313 @@
       modMassMap.put("Carbamidomethyl", 57.021464);
       modMassMap.put("Phospho", 79.966331);
+      modMassMap.put("Sulfo", 79.956815);
       modMassMap.put("Oxidation", 15.994915);
       modMassMap.put("Acetyl", 42.010565);
@@ -323 +329 @@
     modMap.put("Carbamidomethyl", "H(3) C(2) N(1) O(1)");
     modMap.put("Phospho", "H(1) O(3) P(1)");
+    modMap.put("Sulfo", "O(3) S(1)");
     modMap.put("Oxidation", "O(1)");
     modMap.put("Acetyl", "H(2) C(2) O(1)");