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Diff Rev Age Author Log Message
(edit) @4061   12 years Gregory Vincic Cleaning up source code
(edit) @3758   13 years Gregory Vincic Documenting
(edit) @3755   13 years Gregory Vincic Cluster script now creates one job for each selected file
(edit) @3754   13 years Gregory Vincic Adding bitbock_cluster.sh
(edit) @3753   13 years Gregory Vincic Version is printable using -v aswell as --version
(edit) @3752   13 years Gregory Vincic Documenting methods
(edit) @3751   13 years Gregory Vincic Remote server errors are now displayed nicely
(edit) @3750   13 years Gregory Vincic Export parameters are now hidden in bitbock
(edit) @3749   13 years Gregory Vincic Search property files now contain the FILE property, which may be …
(edit) @3748   13 years Gregory Vincic Each search has it's own properties file, which has been adapted for …
(edit) @3745   13 years Gregory Vincic Sorting inparameters in help
(edit) @3744   13 years Gregory Vincic Documenting package and classes
(edit) @3743   13 years Gregory Vincic Adding javadoc target
(edit) @3730   13 years Gregory Vincic Initial revision of mascot tools and api
(edit) @3729   13 years Gregory Vincic Initial revision build.xml and junit-4.3.1.jar file
(edit) @3718   13 years Gregory Vincic Creating branch
(edit) @3444   14 years Fredrik Levander Merging trunk into branch
(edit) @3443   14 years Fredrik Levander Refs #585. Added support for scheduling project parts for deletion. …
(edit) @3432   14 years Fredrik Levander Refs #614. Corrected proton mass
(edit) @3428   14 years Fredrik Levander Merging trunk
(edit) @3427   14 years Fredrik Levander Refs #614. Adjustments
(edit) @3424   14 years Fredrik Levander Refs #614. Matching of features with hits and more.
(edit) @3423   14 years Fredrik Levander Refs #614. Cleaning of feature import plugin
(edit) @3422   14 years Fredrik Levander Refs #614. Initial addition of feature table.
(edit) @3420   14 years Fredrik Levander Creating testing branch of trunk
(edit) @3125   14 years Gregory Vincic Removing branch 2.4.1
(edit) @3124   14 years Gregory Vincic Removing no longer maintained branch genericactions
(edit) @3123   14 years Gregory Vincic Removing no longer maintained branch greg-refactoring
(edit) @3122   14 years Gregory Vincic Removing buggfix branch 2.6.1
(edit) @3119   14 years Gregory Vincic Refs #522. Bumping micro version in branch
(edit) @3118   14 years Gregory Vincic Refs #522. Null arrays are now returned as before. Testing is needed.
(edit) @3117   14 years Gregory Vincic Branching 2.6.0 for bugfix
(edit) @2887   15 years Gregory Vincic Refs #477. Added methods for retrieving the MICRO_VERSION from Application.
(edit) @2886   15 years olle Refs #474. Quick fix for problem with missing user selection of table …
(edit) @2885   15 years Gregory Vincic
(edit) @2065   16 years Gregory Vincic Selecting columns and entering filter data now works, though nothing …
(edit) @2061   16 years Gregory Vincic Users can now show columns that are hidden by default.
(edit) @2060   16 years Gregory Vincic Changed configure() method in factories to several polymorphic methods.
(edit) @2059   16 years Gregory Vincic Hiding columns works. Though default hidden columns can never be shown.
(edit) @2056   16 years Gregory Vincic Merging trunk changes rev 2044-2054
(edit) @2055   16 years Gregory Vincic Added ConfigTemplate? to use when we need to get a table configuration …
(edit) @2053   16 years Gregory Vincic Fixed event error output even though nothing went wrong. Missing …
(edit) @2051   16 years Gregory Vincic Enabled configuration of factories. Also restricted number of chained …
(edit) @2050   16 years Gregory Vincic Table now shows form for selecting visible columns.
(edit) @2049   16 years Gregory Vincic Initial revision of TableFactory2 and FormFactory2. Also added some …
(edit) @2048   16 years Gregory Vincic Added logger for TableFactory2
(edit) @2044   16 years Gregory Vincic Trying to create a generic set of actions for creating, viewing, …
(edit) @1654   16 years Gregory Vincic Merged revision trunk:1623-1652 into greg-refactoring branch
(edit) @1653   16 years Gregory Vincic Formatting code in se.lu.thep.coreftpd package
(edit) @1643   16 years Gregory Vincic Refs #193. Removed IPG.getById(...)
(edit) @1642   16 years Gregory Vincic Refs #193. Removed Hit.getById(...)
(edit) @1641   16 years Gregory Vincic Refs #193. Removed HardwareConfiguration?.getById(...)
(edit) @1640   16 years Gregory Vincic Refs #193. Removed HardwareConfiguration?.getById(...)
(edit) @1639   16 years Gregory Vincic Refs #193. Removed Hardware.getById(...)
(edit) @1638   16 years Gregory Vincic Refs #193. Removed Group.getById(...)
(edit) @1637   16 years Gregory Vincic Refs #193. Removed GlobalDefaultSetting?.getById(...)
(edit) @1636   16 years Gregory Vincic Refs #193. Removed GelScanEvent?.getById(...)
(edit) @1635   16 years Gregory Vincic Refs #193. Removed GelImageAnalysisEvent?.getById(...)
(edit) @1634   16 years Gregory Vincic Refs #193. Removed FileType?.getById(...)
(edit) @1633   16 years Gregory Vincic Refs #193. Removed Experiment.getById(...)
(edit) @1632   16 years Gregory Vincic Refs #193. Removed Directory.getById, replacing its use with …
(edit) @1630   16 years Gregory Vincic Refs #193. Removing getById(...) from Client and BioMaterialEvent?
(edit) @1629   16 years Gregory Vincic Refs #193. Removing AnnotationType?.getById(...)
(edit) @1628   16 years Gregory Vincic Refs #193. Fixed TandemImportPlugins? problems with …
(edit) @1627   16 years Gregory Vincic Refs #193. Fixed TandemImportPlugins? problems with AnnotationTypes? not …
(edit) @1625   16 years Gregory Vincic Refs #193. Merged trunk revision 1617-1623 into greg-refactoring branch.
(edit) @1624   16 years Gregory Vincic Refs #193. AddAnnotation? action now works.
(edit) @1619   16 years Gregory Vincic Refs #193. Merged trunk revision 1566-1617 into greg-refactoring branch.
(edit) @1617   16 years Gregory Vincic Refs #193. Using the Annotator in MzData? package.
(edit) @1615   16 years Gregory Vincic Refs #193. Added documentation.
(edit) @1614   16 years Gregory Vincic Refs #193. Added indentation.
(edit) @1613   16 years Gregory Vincic Refs #193. XsdToTagFactory? now creates a crued TagFactory? from …
(edit) @1603   16 years Gregory Vincic Refs #193. Initial revision of SchemaFactory? and XsdToTagFactory?
(edit) @1601   16 years Gregory Vincic Refs #193. Using the Annotator in TandemImportPlugin?.
(edit) @1600   16 years Gregory Vincic Refs #193. Using the Annotator in PklImportPlugin?.
(edit) @1599   16 years Gregory Vincic Refs #193. Using the Annotator in PiumsPepfilImportPlugin?.
(edit) @1598   16 years Gregory Vincic Refs #193. Fixed Annotator and AnnotationSet? as the Identifiable …
(edit) @1597   16 years Gregory Vincic Refs #193. Using the Annotator in PiumsMatcherImportPlugin?. Also …
(edit) @1596   16 years Gregory Vincic Refs #193. Using the Annotator in FormFactory?.
(edit) @1595   16 years Gregory Vincic Refs #193. Using the Annotator in GUIFactory.
(edit) @1594   16 years Gregory Vincic Refs #193. Using the Annotator in ViewActiveSample? action.
(edit) @1593   16 years Gregory Vincic Refs #193. Using the Annotator.
(edit) @1592   16 years Gregory Vincic Refs #193. Moved set of methods from AnnotationSet? to Annotator class. …
(edit) @1587   16 years Gregory Vincic Refs #193. Removed commented code containing the word daughter.
(edit) @1586   16 years Gregory Vincic Refs #193. Removed commented code in HardwareConfiguration?.
(edit) @1585   16 years Gregory Vincic Refs #193. Removed Hardware.getNew method.
(edit) @1584   16 years Gregory Vincic Refs #193. Removed BioMaterialEvent?.getNew and getNewCreationEvent methods
(edit) @1583   16 years Gregory Vincic Refs #193. Removing SecondaryStorageController?.
(edit) @1582   16 years Gregory Vincic Refs #193. Removing commented code from Peak, PeakList? and PeakListSet?.
(edit) @1581   16 years Gregory Vincic Refs #193. Removed Protocol.getNew method
(edit) @1580   16 years Gregory Vincic Refs #193. Removed methods from User: getClientSettings, …
(edit) @1579   16 years Gregory Vincic Refs #193. Removed User.getNew method
(edit) @1578   16 years Gregory Vincic Refs #193. Removed Software.getNew and SoftwareType?.newSoftware methods.
(edit) @1577   16 years Gregory Vincic Refs #193. Removed News.getNew(...) method.
(edit) @1576   16 years Gregory Vincic Refs #193. Removed Job.getNew(...) method.
(edit) @1575   16 years Gregory Vincic Refs #193. Removed File.getById method.
(edit) @1572   16 years Gregory Vincic Refs #193. Removed methods getNew and getByPath from File class.
(edit) @1571   16 years Gregory Vincic Refs #193. Removed commented code from Directory class.
(edit) @1570   16 years Gregory Vincic Refs #193. Removed methods from Directory class: copySubdirectories, …
(edit) @1569   16 years Gregory Vincic Refs #193. Removed UserClientSetting?.getNew
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