source: trunk/client/servlet

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Diff Rev Age Author Log Message
(edit) @3405   14 years Gregory Vincic Refs #440. LabeledExtract? related actions modified to use …
(edit) @3404   14 years Gregory Vincic Refs #440. Implementing LabeledExtractForm? and it's components as an …
(edit) @3399   14 years Gregory Vincic Refs #440. Documenting the Form class
(edit) @3398   14 years Gregory Vincic Refs #440. Adding initial design documents.
(edit) @3397   14 years Fredrik Levander
(edit) @3394   14 years olle Refs #544. Refs #518. Refs #517. First version of support for aborting …
(edit) @3388   14 years olle Refs #603. Refs #287. First version of routine for setting same MIME …
(edit) @3382   14 years olle Refs #596. First version of administrator view of logged-in users, …
(edit) @3381   14 years olle Refs #596. Refs #356. Refs #287. First version of administrator view …
(edit) @3380   14 years Gregory Vincic Clarifying ifstatement
(edit) @3379   14 years olle Refs #591. Refs #471. Refs #490. First version of support for …
(edit) @3378   14 years Gregory Vincic Refactoring variable definition to beginning of method runMe
(edit) @3376   14 years olle Refs #600. Refs #541. Class/file action/hit/ShowPDBFileStructure.java …
(edit) @3375   14 years olle Refs #600. Refs #541. Class/file action/hit/ViewActiveHitPDBFile.java …
(edit) @3374   14 years olle Refs #600. Refs #541. Class/file action/hit/ShowPDBFileStructure.java …
(edit) @3373   14 years olle Refs #599. Refs #552. Refs #507. Class/file …
(edit) @3372   14 years olle Refs #599. Refs #552. Class/file action/ActionFactory.java in …
(edit) @3371   14 years olle Refs #599. Refs #552. Class/file action/hit/ViewActiveHitSpectrum.java …
(edit) @3370   14 years olle Refs #592. First version of support for zoom functionality when …
(edit) @3369   14 years olle Refs #592. Class/file …
(edit) @3368   14 years olle Refs #592. Class/file action/hit/ViewActiveHitSpectrum.java in …
(edit) @3367   14 years olle Refs #592. Refs #540. Refs #287. First version of support for zoom …
(edit) @3366   14 years olle Refs #425. Refs #592. Class/file …
(edit) @3364   14 years olle Refs #595. Class Application updated with new public static …
(edit) @3362   14 years olle Refs #595. Changes committed in changeset …
(edit) @3361   14 years olle Refs #595. Class/file core/Application.java in api/core/ updated by …
(edit) @3360   14 years olle Refs #595. Proteios SE version specification extended with an optional …
(edit) @3352   14 years olle Refs #535. Class/file gui/form/FormFactory.java in client/servlet/ …
(edit) @3351   14 years olle Refs #535. Refs #287. Support for hits comparison updated with protein …
(edit) @3349   14 years olle Refs #535. Refs #287. Support for hits comparison updated: 1. …
(edit) @3348   14 years olle Refs #535. Class/file action/hit/HitsComparisonReportStep1.java in …
(edit) @3347   14 years Fredrik Levander Refs #552. Avoiding null pointer exception in case spectrum id is null
(edit) @3346   14 years Fredrik Levander Fixes #552. Spectrum string id is now shown in hits properties with …
(edit) @3345   14 years Fredrik Levander Refs #552. Updates to GUI for spectrum string id.
(edit) @3344   14 years Fredrik Levander Refs #550. Added keep random to dictionary
(edit) @3343   14 years olle Refs #535. Refs #287. Support for comparison of hits report updated by …
(edit) @3342   14 years olle Refs #535. Refs #287. Support for comparison of hits report updated by …
(edit) @3341   14 years olle Refs #535. Refs #287. Support for comparison of hits report updated by …
(edit) @3338   14 years olle Refs #590. Refs #241. Class/file …
(edit) @3336   14 years Fredrik Levander Refs #535. Changed initial query to find selectable projects so that …
(edit) @3335   14 years Fredrik Levander Fixes #589. Fixes #551. Added possibility to limit protein assembly by …
(edit) @3332   14 years olle Refs #526. Refs #471. Class/file gui/form/FormFactory.java in …
(edit) @3328   14 years Fredrik Levander Refs #587. Making query a bit more robust in case database column …
(edit) @3327   14 years olle Refs #580. Refs #187. Refs #287. Text of button to clear the Hits …
(edit) @3325   14 years olle Refs #584. Refs #287. Non-gel import updated to check length of …
(edit) @3321   14 years olle Refs #535. Refs #287. Refs #290. First revision of support for …
(edit) @3319   14 years Gregory Vincic Refs #588. Fixing first couple of steps. Having trouble with the …
(edit) @3318   14 years Gregory Vincic Moved description to the right as it's likely that users do not want …
(edit) @3317   14 years Gregory Vincic Fixes #587. Menu listing and Home view now hide all closed projects.
(edit) @3316   14 years Gregory Vincic Refs #587. Users can now close a project though it does not affect any …
(edit) @3314   14 years Gregory Vincic Refs #555. Hit filters are now changed accordingly to type of project.
(edit) @3312   14 years Gregory Vincic Refs #555. Default columns for the hits view are now defined in the …
(edit) @3311   14 years olle Refs #526. Refs #471. Class/file gui/form/FormFactory.java in …
(edit) @3310   14 years olle Refs #564. Refs #471. Listing of OMSSA parameter set storage items …
(edit) @3309   14 years olle Refs #564. Refs #534. Listing of Mascot parameter set storage items …
(edit) @3308   14 years Fredrik Levander Refs #405. Clarified non-gel export filtering in form.
(edit) @3304   14 years olle Refs #562. Refs #420. JSP file www/static/css/layout2.jsp in …
(edit) @3303   14 years olle Refs #564. Refs #363. Listing of X!Tandem parameter set storage items …
(edit) @3302   14 years Fredrik Levander Refs #550. Added instructions for propagation of random hits.
(edit) @3301   14 years olle Refs #576. Class/file action/read/ListTrash.java in client/servlet/ …
(edit) @3300   14 years olle Refs #576. Class/file action/read/ListTrash.java in client/servlet/ …
(edit) @3299   14 years olle Refs #534. Class/file …
(edit) @3297   14 years olle Refs #534. Refs #356. Refs #287. First revision of Mascot search in …
(edit) @3296   14 years olle Refs #534. Configuration and template files for Mascot search added or …
(edit) @3295   14 years olle Refs #534. Added new source directory action/mascot in client/servlet/ …
(edit) @3293   14 years olle Refs #575. Refs #471. Class/file …
(edit) @3292   14 years olle Refs #575. Refs #362. Refs #471. Bug fixed in the save class when …
(edit) @3291   14 years olle Refs #575. Refs #362. Refs #471. Bug fixed when transferring value of …
(edit) @3290   14 years Gregory Vincic Fixes #573.
(edit) @3288   14 years olle Refs #566. Jobs created for X!Tandem and OMSSA searches, as well as …
(edit) @3286   14 years olle Refs #563. Refs 557. The Jobs table will now show other users' items, …
(edit) @3284   14 years olle Refs #557. Refs #242. Refs #517. Refs #559. First revision of extra …
(edit) @3283   14 years Fredrik Levander Fixes #560. Looking up reporter ratios in adjacent spectra if needed. …
(edit) @3282   14 years olle Refs #556. Refs #507. Refs #554. First version of view action for …
(edit) @3280   14 years olle Refs #554. Support for viewing original search results for Mascot …
(edit) @3279   14 years olle Refs #554. Refs #287. Refs #290. File properties form extended with a …
(edit) @3278   14 years olle Refs #536. Refs #537. Spectrum file inspection utility updated to …
(edit) @3277   14 years olle Refs #537. Refs #491. Support for extended spectrum info when …
(edit) @3276   14 years olle Refs #554. First version of support for viewing original search …
(edit) @3275   14 years olle Refs #553. Refs #537. Refs #491. Class/file gui/formFormFactory.java …
(edit) @3271   14 years olle Refs #537. Refs #491. First revision of support for extended spectrum …
(edit) @3268   14 years Fredrik Levander Refs #552. Using spectrum id if it is available. Needs to be …
(edit) @3267   14 years Fredrik Levander Refs #550. Adding option to keep random hits.
(edit) @3265   14 years olle Refs #537. Refs #491. Spectrum file inspection utility updated to …
(edit) @3260   14 years Gregory Vincic Removing compile warnings
(edit) @3259   14 years Gregory Vincic Refs #539. getForm(Class, Object) displays the itemId as a disabled field.
(edit) @3258   14 years Gregory Vincic Added URI to dictionary and removed a debug println statement from File.
(edit) @3257   14 years Gregory Vincic Fixes #546. Removed concurency problems. Tested with test no. 8
(edit) @3256   14 years Gregory Vincic Adding test 7 to target 'all'
(edit) @3255   14 years Gregory Vincic Refs #366. URI with basic authentication works.
(edit) @3254   14 years Gregory Vincic Refs #366. Using hello.txt file in test.
(edit) @3253   14 years Gregory Vincic Refs #366. File form displays the URI and downloading a non …
(edit) @3245   14 years Gregory Vincic Refs #366. Fixing test for modifying filename.
(edit) @3244   14 years Gregory Vincic Refs #366. Added test for renaming a file.
(edit) @3243   14 years Gregory Vincic Refs #366. Working test for disallowed protocol ​file://
(edit) @3242   14 years Gregory Vincic Refs #546. File upload test works. Also started on testing the …
(edit) @3238   14 years Gregory Vincic Refs #546. Moving getAttributes(...) method out of RequestData?.
(edit) @3237   14 years Gregory Vincic Refs #546. Removing method isValidResource() from RequestData?.
(edit) @3236   14 years Gregory Vincic Refs #546. Removing wrappermethod getParameter(...) in RequestData?.
(edit) @3235   14 years Gregory Vincic Moving parsePath(...) and getClass(...) methods from RequestData?.
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