#163 closed (fixed)
Implement combined hits report
| Reported by: | Fredrik Levander | Owned by: | Fredrik Levander |
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| Milestone: | 2.0 beta 1 | Keywords: | |
| Cc: |
Description
The hits report could be used as a basis for a report where scores from multiple search engines are used to filter the list as in Proteios1. Ideally this would yield a new hits report with other columns. Initially it could be saved to a file, but ideally it should be viewable, clickable and exportable.
Change History (24)
comment:1 Changed 16 years ago by
| Milestone: | Alpha 2 → Beta 1 |
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comment:2 Changed 16 years ago by
| Owner: | changed from Gregory Vincic to Fredrik Levander |
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| Status: | new → assigned |
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| Resolution: | → fixed |
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| Status: | assigned → closed |
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(In [3046]) Refs #500. Refs #163. Refs #287. First support of allowing selection of score types to combine in combined hits report:
- Class/file gui/form/FormFactory.java in client/servlet/ updated
in public method Form getCombineHitsForm(Project project) by
use of three field sets instead of one, where the second one
contains new score type select boxes for each available score type,
with alternatives "Not used", "E-value", and "Score". The score
types and their settings are transferred via VString valid
parameters to class/file action/hit/CombineHits.java in
client/servlet/.
- Class/file action/hit/CombineHits.java in client/servlet/
updated in protected method void runMe() by obtaining the lists
of score type names and score type settings from values of the
VString valid parameters. New String lists are created that
only contain the entries for the score types that were selected
to be used. The new lists are transferred as StringParameterType
parameter values to the job created.
- Class/file plugins/CombinedHitsReport.java in plugin/ updated
in public method
void run(Request request, Response response, ProgressReporter? progress)
by obtaining the string lists of score types and their settings
from job parameters, and creating String and boolean arrays
score_types and compareE, respectively, with values
corresponding to the obtained list data.
- English dictionary file locale/en/dictionary in client/servlet/
updated with new entries for various string keys.
comment:20 Changed 14 years ago by
(In [3048]) Refs #500. Refs #163. Support of allowing selection of score types to combine in combined hits report is updated by not including score type "Proteios Protein" as a score type alternative, since this score type indicates protein hits generated by "Protein Assembly", and these hits are therefore already combined:
- Class/file gui/form/FormFactory.java in client/servlet/ updated
in public method Form getCombineHitsForm(Project project) by filtering out score type "Proteios Protein" as an available score type alternative.
(In [1451]) Refs #163. Added GUI functionality and dummy plugin for generation of combined hits report with export to file.