Opened 14 years ago

Closed 14 years ago

Last modified 14 years ago

#502 closed (fixed)

Upgrade mzML converters to 1.1.0

Reported by: Fredrik Levander Owned by: Fredrik Levander
Milestone: Proteios SE 2.6 Keywords:
Cc:

Description

Refs #248. A new version of the mzML format is being released. The converters should be updated to generate data in this format.

Furthermore, the DTA converter should not end with an error if lcq_dta.txt is missing. If input is a file instead of a directory it should also work.

Change History (21)

comment:1 Changed 14 years ago by Fredrik Levander

component: servlet → plugin
Milestone: Proteios SE Future Release → Proteios SE 2.6
Owner: changed from Gregory Vincic to Fredrik Levander
severity: 16 → 2
Status: new → assigned
type: defect → enhancement

comment:2 Changed 14 years ago by Fredrik Levander

(In [3015]) Refs #502. Corrected dta MD5 sum of unused files

comment:3 Changed 14 years ago by Fredrik Levander

(In [3016]) Refs #502. dta converter updated

comment:4 Changed 14 years ago by Fredrik Levander

(In [3017]) Refs #502. DTA converter updated to development version of 1.1.0

comment:5 Changed 14 years ago by Fredrik Levander

(In [3018]) Refs #502. PLGS converter updated to development version of 1.1.0

comment:6 Changed 14 years ago by Fredrik Levander

(In [3019]) Refs #502. PLGS converter updated with spectrum id format

comment:7 Changed 14 years ago by Fredrik Levander

(In [3047]) Refs #502. Updated mzML converters to preliminary 1.1.0.

comment:8 Changed 14 years ago by Fredrik Levander

(In [3049]) Refs #502. Adjustments of cvParams

comment:9 Changed 14 years ago by Fredrik Levander

(In [3063]) Refs #394. Refs #502. Updated mzML reader to mzML 1.1.0

comment:10 Changed 14 years ago by Fredrik Levander

Resolution: → fixed
Status: assigned → closed

(In [3067]) Fixes #502. Presumably the converters are now finally at 1.1.0.

comment:11 Changed 14 years ago by Fredrik Levander

(In [3078]) Refs #502. Unit Ontology was not properly named

comment:12 Changed 14 years ago by Fredrik Levander

Resolution: fixed
Status: closed → reopened

comment:13 Changed 14 years ago by Fredrik Levander

Resolution: → fixed
Status: reopened → closed

(In [3089]) Fixes #502. Changed some CV param names and updated the schema.

comment:14 Changed 14 years ago by Fredrik Levander

(In [3151]) Refs #502. Introduced the final changes.

comment:15 Changed 14 years ago by Fredrik Levander

(In [3153]) Refs #502. Updated ontology version

comment:16 Changed 14 years ago by Fredrik Levander

(In [3176]) Refs #502. Updated version and scan time term

comment:17 Changed 14 years ago by Fredrik Levander

(In [3177]) Refs #502. Updated CV term names

comment:18 Changed 14 years ago by Fredrik Levander

(In [3178]) Refs #502. Changed dta to DTA

comment:19 Changed 14 years ago by Fredrik Levander

(In [3179]) Refs #502. Added units to intensity arrays

comment:20 Changed 14 years ago by Fredrik Levander

(In [3251]) Refs #502. Updated URIs for source files i converters. Updated mzML schema and references to it.

comment:21 Changed 14 years ago by Fredrik Levander

(In [3281]) Refs #502. MassLynx? name updated and CV version changed.

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