Opened 10 years ago

Closed 9 years ago

#809 closed (fixed)

PRIDE export of modifications

Reported by: Fredrik Levander Owned by: Fredrik Levander
Milestone: Proteios SE 2.19.0 Keywords:
Cc:

Description

The support for export of peptide modifications in PRIDE XML should be updated to follow the current standard. Refs #405. Refs #807.

Change History (6)

comment:1 Changed 10 years ago by Fredrik Levander

(In [4485]) Refs #809. Initial refactoring to make functions for retrieval of modifications available for all plugins.

comment:2 Changed 10 years ago by Fredrik Levander

(In [4493]) Refs #809. Refs #807. Update of PRIDE xml peptide modification writing to use help functions in core classes for parsing and conversion to PSI MOD. Update of mzML instrument retrieval to support both referenceable param groups and in-block cvParam representations for instrument name.

comment:3 Changed 10 years ago by Fredrik Levander

(In [4502]) Refs #809. Bug fix.

comment:4 Changed 10 years ago by Fredrik Levander

(In [4503]) Refs #809. Phosphorylation name fixed.

comment:5 Changed 10 years ago by Fredrik Levander

(In [4504]) Refs #809. Setting modification mass difference if absent.

comment:6 Changed 9 years ago by Fredrik Levander

Resolution: fixed
Status: newclosed

(In [4512]) Fixes #809. Fixed reporting of static modifications when no variable modifications present.

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