Timeline



Jun 14, 2007:

10:10 PM Changeset [1738] by Gregory Vincic
Refs #219. Initial revision of api/core/build.xml. Still nothing is moved!
9:45 PM Changeset [1737] by Gregory Vincic
Refs #219. Implemented test target in api/waf/build.xml
9:32 PM Changeset [1736] by Gregory Vincic
Refs #219. Added initial build file for api/waf. Still nothing has …
9:08 PM Changeset [1735] by Gregory Vincic
Refs #219. Initial revision of the new directory structure. Nothing …
2:32 PM Ticket #219 (Restructure directory layout) created by Gregory Vincic
As the project is growing our directory layout feels cluttered. …
12:37 PM Changeset [1734] by olle
Refs #217. Class/file gui/form/FormFactory.java updated in private …
10:59 AM Ticket #218 (Error message after login) created by Fredrik Levander
This error meassage appears after login for all users (alpha3 …
10:20 AM Changeset [1733] by Fredrik Levander
Refs #209. Added pair comparison plugin to install file
10:19 AM Changeset [1732] by Fredrik Levander
Refs #209. Added plugin for generation of include lists from msInspect …

Jun 13, 2007:

9:37 PM Changeset [1731] by Gregory Vincic
Removed System.out.println from Localizer and some other logging outputs.
4:14 PM Changeset [1730] by Gregory Vincic
Changed level of logging for filter creation in HibernateUtil? from …
4:08 PM Changeset [1729] by Gregory Vincic
Adding feature to use different proteios.config file at startup. …
2:17 PM Changeset [1728] by olle
Refs #217. Class/file gui/form/FormFactory.java updated to use a …
10:11 AM Ticket #217 (Description fields generated by the FormFactory should be displayed as ...) created by Gregory Vincic
As the text is usually large in that field it should be a …

Jun 12, 2007:

2:23 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) closed by olle
worksforme: Ticket closed again as comment and test changes related to Date …
2:18 PM Changeset [1727] by olle
Refs #213. Class/file action/file/GenericFormTestSheet.java updated by …
2:02 PM Changeset [1726] by olle
Refs #213. Class/file gui/form/FormFactory.java updated in public …
1:57 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) reopened by olle
Ticket reopened to add comment and test changes related to Date …
9:06 AM Changeset [1725] by Gregory Vincic
Documented several methods related to VParam reading and writing in …
8:58 AM Changeset [1724] by olle
Refs #187. Class/file action/hit/ClearHits.java updated in method …
8:46 AM Changeset [1723] by olle
Refs #187. First revision of confirmation action. 1. Class/file …

Jun 8, 2007:

4:33 PM Ticket #215 (It should be possible to create and edit News items from GUI) closed by olle
worksforme: Ticket closed as the desired functionality has been added.
4:32 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) closed by olle
worksforme: Ticket closed as the desired functionality has been added.
4:30 PM Ticket #210 (ProjectKey for items created or uploaded via FTP should be set to that ...) closed by olle
worksforme: Ticket closed as the desired functionality has been added.
4:28 PM Ticket #205 (Not possible for several users to log in to ftp-server simultaneously) closed by olle
worksforme: Ticket closed as the desired functionality has been added.
3:58 PM Changeset [1722] by olle
Refs #215. News table updated to support creation and editing of news …
3:15 PM Changeset [1721] by olle
Refs #215. Class/file gui/table/TableFactory.java updated to support …
2:54 PM Ticket #216 (Generate plate for hits report) created by Fredrik Levander
I should be possible to generate an empty plate for the hits report, …
2:44 PM Changeset [1720] by olle
Refs #215. Class/file gui/table/TableFactory.java updated in private …
2:30 PM Changeset [1719] by olle
Refs #215. Class/file gui/table/TableFactory.java updated in method …
2:04 PM Changeset [1718] by olle
Refs #215. Class/file core/News.java updated in method void …
1:55 PM Ticket #215 (It should be possible to create and edit News items from GUI) created by olle
It should be possible to create and edit News items from GUI. The …

Jun 7, 2007:

4:27 PM Changeset [1717] by olle
Refs #213. Class/file action/file/ReadGenericForm.java updated in …
2:49 PM Ticket #214 (Extensions) created by Gregory Vincic
Extending proteios gui enables us to streamline plugin configuration …
2:46 PM Changeset [1716] by Gregory Vincic
Removed unused code from ActionFactory?.
1:01 PM Changeset [1715] by olle
Refs #213. Class/file se/lu/thep/waf/constraints/VDate.java updated in …
12:57 PM Changeset [1714] by Gregory Vincic
Updated build file, setting the version for alpha3 release.

Jun 5, 2007:

4:50 PM GelBasedReport edited by Fredrik Levander
Added specific info for PLGS to mzData conversion (diff)
4:41 PM PLGSInstrument.xml attached to GelBasedReport by Fredrik Levander
Instrument information for Protein Lynx to mzData conversion
4:06 PM Changeset [1713] by olle
Refs #213. Generic form creation updated with support for Date …
3:15 PM Changeset [1712] by olle
Refs #213. Class/file gui/form/FormFactory.java updated in method …
2:54 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) created by olle
Generic form creation should be updated to support the following …
1:13 PM Changeset [1711] by Gregory Vincic
Added tests for all date formats in VDate.Format enumeration.
10:40 AM Changeset [1710] by olle
Typo in definition of TIMESTAMP corrected.
10:16 AM Changeset [1709] by Gregory Vincic
Added support for valid date parameters.

Jun 4, 2007:

3:25 PM Changeset [1708] by Fredrik Levander
Refs #188. Instrumenet info can now be added from xml file to the PLGS …
12:40 PM GelBasedReport edited by Fredrik Levander
(diff)
12:38 PM GelBasedReport edited by Fredrik Levander
(diff)
12:34 PM GelBasedReport edited by Fredrik Levander
(diff)
12:16 PM GelBasedReport edited by Fredrik Levander
(diff)
12:10 PM UserGuide edited by Fredrik Levander
(diff)
12:08 PM GelBasedReport created by Fredrik Levander
First version of gel reporting
11:03 AM UserGuide edited by Fredrik Levander
(diff)
10:15 AM UserGuide edited by Fredrik Levander
(diff)

Jun 1, 2007:

2:21 PM HitsReportHelp created by Fredrik Levander
2:07 PM UserGuide edited by Fredrik Levander
(diff)
1:44 PM FTPServerUsage edited by Fredrik Levander
(diff)
1:42 PM FTPServerUsage edited by Fredrik Levander
(diff)
11:01 AM Ticket #212 (Create generic forms by templates) created by olle
Generic forms should be created from a template as input, in order to …
10:56 AM Changeset [1707] by Gregory Vincic
Fixed bug in action.AddProject? where the project directory was never …
9:57 AM Changeset [1706] by Fredrik Levander
Refs #209. Added math library

May 31, 2007:

12:30 PM FTPServerUsage edited by olle
Added recommendation to only use a single connection for FTP file transfer. (diff)
8:33 AM Changeset [1705] by olle
Refs #210. Proteios FTP Server code updated to set ProjectKey? for …
8:17 AM Ticket #211 (ProjectKey for items created or uploaded via FTP should be set to that ...) closed by olle
duplicate: This ticket is a duplicate of Ticket #210.
8:15 AM Ticket #211 (ProjectKey for items created or uploaded via FTP should be set to that ...) created by olle
ProjectKey for items created or uploaded via FTP should be set to …
8:14 AM Ticket #210 (ProjectKey for items created or uploaded via FTP should be set to that ...) created by olle
ProjectKey for items created or uploaded via FTP should be set to …

May 30, 2007:

4:05 PM Changeset [1704] by Fredrik Levander
Refs #209. Added plugin to install file.
4:03 PM Changeset [1703] by Fredrik Levander
Refs #209. Plugin for analysis of msInspect alignments added. The …
4:02 PM Ticket #209 (Enable LC-MS comparisons and include list generation) created by Fredrik Levander
Comparisons of LC-MS runs should be enabled. In the first version, …
11:16 AM Changeset [1702] by Fredrik Levander
Refs #129. Refs#191. Corrected annotations in piums matcher import
9:55 AM Changeset [1701] by Fredrik Levander
Refs #129. Refs #191. Piums matcher import updated to work with new …
9:52 AM Changeset [1700] by Fredrik Levander
Refs #191. Corrected function for getting annotationtype from cache, …

May 29, 2007:

4:46 PM FTPServerUsage edited by olle
Section "Some Notes on Using FTP Client Programs" replaced by three … (diff)
2:50 PM Changeset [1699] by Gregory Vincic
Removed unused styling in layout2.jsp for old History- and Switchbar. …
2:36 PM Ticket #207 (Enable start/stop of jobqueue) closed by Gregory Vincic
fixed
2:34 PM Ticket #182 (Add check all button, in table listing) closed by Gregory Vincic
fixed: This was fixed when fixing ticket #169
2:33 PM Changeset [1698] by Gregory Vincic
Fixes #184. List of jobs now shows the status of each job.
2:33 PM Ticket #184 (Add job status column to job hits) closed by Gregory Vincic
fixed: (In [1698]) Fixes #184. List of jobs now shows the status of each job.
12:10 PM Changeset [1697] by Gregory Vincic
Refs #208. Projects are not commonitems which interm meant that the …
12:03 PM Changeset [1696] by Gregory Vincic
Refs #191. createAnnotationType now adds newly created Annotations to …
11:20 AM Changeset [1695] by olle
Refs #199. Refs #204. Refs #205. Class/file …
11:19 AM Changeset [1694] by Gregory Vincic
Added two new selenium tests. One for annotating samples and one to …
11:15 AM Changeset [1693] by Gregory Vincic
Added PeakListSets? in english dictionary under locale/en/dictionary
11:09 AM Ticket #208 (Description columns should have BigText enabled) created by Gregory Vincic
When auto generating tables, the column for description should have …
10:44 AM Changeset [1692] by Gregory Vincic
Refs #191. Annotator now caches AnnotationTypes? for one given DbControl?.
8:17 AM Changeset [1691] by olle
Refs #199. Refs #204. Refs #205. Class/file …
8:14 AM Changeset [1690] by olle
Refs #199. Refs #204. Refs #205. Class/file …

May 28, 2007:

3:35 PM Changeset [1689] by Gregory Vincic
Refs #207. Disabling jobqueue in ftp.properties.in
3:06 PM Changeset [1688] by olle
Refs #204. Class/file ftp_server/FTPNewConnection.java updated in …
2:41 PM Changeset [1687] by Gregory Vincic
Refs #207. Before starting the application using Application.start() …
2:26 PM Changeset [1686] by olle
Refs #119. Windows batch file for starting Proteios FTP Server, …
12:37 PM Changeset [1685] by olle
Refs #204. Class/file ftp_server/FTPNewConnection.java updated in …
9:26 AM Ticket #203 (Default hiding of table columns) closed by olle
worksforme: Ticket closed as the desired functionality has been added.
9:25 AM Ticket #202 (Default sorting of Hits table columns) closed by olle
worksforme: Ticket closed as the desired functionality has been added.

May 27, 2007:

9:09 PM Changeset [1684] by Jari Häkkinen
svndigest related: External programs should not be included in stats.
9:08 PM Changeset [1683] by Jari Häkkinen
svndigest related: External programs should not be included in stats.
9:06 PM Changeset [1682] by Jari Häkkinen
svndigest related: External license texts should not be included in stats.
9:04 PM Changeset [1681] by Jari Häkkinen
Tagging program generated files to be ignored by svndigest.

May 25, 2007:

4:41 PM Changeset [1680] by olle
Refs #204. Proteios FTP Server code updated by addition of close …
3:07 PM Ticket #206 (Directory view type changes after file upload) closed by Fredrik Levander
fixed
3:00 PM Changeset [1679] by Gregory Vincic
Added getSessionAttribute(VBoolean) to AbstractAction?.
2:08 PM Changeset [1678] by olle
Refs #204. Proteios FTP Server updated to fix problem when uploading …
1:43 PM Changeset [1677] by Gregory Vincic
Refs #206. Rewrote action forwarding to remove confusion. SelectFile?
11:08 AM Ticket #207 (Enable start/stop of jobqueue) created by Gregory Vincic
Jobqueue is today enabled using the configuration …
11:02 AM Ticket #206 (Directory view type changes after file upload) reopened by Fredrik Levander
9:34 AM Changeset [1676] by olle
Refs #205. Proteios FTP Server code updated to create a new …
8:58 AM Ticket #206 (Directory view type changes after file upload) closed by Gregory Vincic
fixed: Fixed, saved a comment in ticket #169. revision 1671

May 24, 2007:

3:37 PM Ticket #206 (Directory view type changes after file upload) created by Fredrik Levander
After upload of a file the directory view changes to old type which is …
3:10 PM Ticket #205 (Not possible for several users to log in to ftp-server simultaneously) created by olle
It is currently not possible for several users to log in the Proteios …
12:58 PM Ticket #204 (Not possible to upload files using ftp-server) created by olle
When one tries to upload a file using the Proteios FTP server, a …
11:02 AM Changeset [1675] by Gregory Vincic
Refs #193. Removed Annotation.getNew(...)
10:58 AM Changeset [1674] by olle
Refs #71. Class/file io/XMLReaderUtil.java updated by correction of …
10:58 AM Changeset [1673] by Gregory Vincic
Refs #193. Peaklist annotations are now saved again. Though CvParams?
10:02 AM Changeset [1672] by olle
Refs #203. Class/file gui/table/TableFactory.java updated to support …
9:24 AM Ticket #203 (Default hiding of table columns) created by olle
It should be possible to specify a default list of columns that should …
9:23 AM Changeset [1671] by Gregory Vincic
Refs #169. Fixed problem with wrong view of SelectFile? when adding a …
9:18 AM Changeset [1670] by olle
Refs #202. Class/file gui/table/TableFactory.java updated by setting …
8:11 AM Changeset [1669] by Gregory Vincic
Refs #169. Fixed fileselection from import wizzards. Also added full …

May 23, 2007:

11:49 PM Changeset [1668] by Gregory Vincic
Refs #169. Fixed exception in ViewLeft? when root is logged in.
3:58 PM Changeset [1667] by olle
Refs #202. Class/file gui/table/TableFactory.java updated by removing …
3:01 PM Changeset [1666] by Gregory Vincic
Refs #169. Restored Delete and Use buttons. Also fixed bug for which …
1:51 PM Changeset [1665] by Gregory Vincic
Refs #169. Removed checkboxes from directories. This was done so that …
1:45 PM Changeset [1664] by Gregory Vincic
Refs #169. Selecting all checkboxes now works in firefox(untested in IE)
1:12 PM Changeset [1663] by Gregory Vincic
Refs #169. ViewActiveDirectory? is replaced with SelectFile? to have a …
11:54 AM Changeset [1662] by olle
Refs #202. Refs #178. Class/file action/hit/ListHits.java updated in …
11:29 AM Changeset [1661] by olle
Refs #202. Class/file gui/table/TableFactory.java updated to support …
11:27 AM Changeset [1660] by Gregory Vincic
Refs #169. Removed tree structure of directories from menu as the …
10:59 AM Changeset [1659] by Gregory Vincic
Refs #169. SelectFile? action now allows for browsing through the users …
8:20 AM Ticket #202 (Default sorting of Hits table columns) created by olle
Due to the large number of columns in the Hits table, a default …

May 22, 2007:

2:25 PM Changeset [1658] by olle
Refs #188. Class/file plugins/PklToMzDataPlugin.java updated by …
2:00 PM Changeset [1657] by Gregory Vincic
Refs #169. Added parent directory to ViewActiveDirectory?
12:44 PM Changeset [1656] by Gregory Vincic
Merging greg-refactoring:1566-1654 into trunk
12:39 PM Changeset [1655] by olle
Refs #199. Class/file se/lu/thep/coreftpd/ftp_server/MyLS.java updated …
11:59 AM FTPServerUsage edited by olle
Removed section on listing and recovering removed items (diff)
11:53 AM FTPServerUsage edited by olle
Removed old style output of LIST command (diff)
11:48 AM FTPServerUsage edited by olle
Main example sections updated to output of LIST command as 'ls -l' type. (diff)
9:24 AM Changeset [1654] by Gregory Vincic
Merged revision trunk:1623-1652 into greg-refactoring branch
8:50 AM Changeset [1653] by Gregory Vincic
Formatting code in se.lu.thep.coreftpd package
8:49 AM Changeset [1652] by Gregory Vincic
Formatting code in se.lu.thep.coreftpd package

May 21, 2007:

4:50 PM Changeset [1651] by olle
Refs #199. Class/file se/lu/thep/coreftpd/common/StreamIO.java updated …
4:46 PM Changeset [1650] by olle
Refs #199. Class/file se/lu/thep/coreftpd/ftp_server/MyLS.java updated …
4:40 PM Changeset [1649] by olle
Refs #199. Class/file …
10:33 AM Changeset [1648] by Fredrik Levander
Refs #188. Added PLGS converter and file type to install file
10:29 AM Changeset [1647] by Fredrik Levander
Refs #188. File type PLGS (protein lynx global server peak list) added.

May 16, 2007:

11:00 AM Ticket #201 (Add delete button to jobs) created by Fredrik Levander
It should be possible to delete the job list. The list get long …
9:48 AM Changeset [1646] by olle
Refs #199. Class/file se/lu/thep/coreftpd/ftp_server/FileAccess.java …
9:29 AM Changeset [1645] by olle
Refs #199. Class/file se/lu/thep/coreftpd/ftp_server/FileAccess.java …

May 15, 2007:

1:59 PM Changeset [1644] by Fredrik Levander
Refs #188. Conversion of ProteinLynx? Global Server QTOF-MSMS files to …
10:41 AM Changeset [1643] by Gregory Vincic
Refs #193. Removed IPG.getById(...)
10:40 AM Changeset [1642] by Gregory Vincic
Refs #193. Removed Hit.getById(...)
10:36 AM Changeset [1641] by Gregory Vincic
Refs #193. Removed HardwareConfiguration?.getById(...)
10:35 AM Changeset [1640] by Gregory Vincic
Refs #193. Removed HardwareConfiguration?.getById(...)
10:34 AM Changeset [1639] by Gregory Vincic
Refs #193. Removed Hardware.getById(...)
10:33 AM Changeset [1638] by Gregory Vincic
Refs #193. Removed Group.getById(...)
10:32 AM Changeset [1637] by Gregory Vincic
Refs #193. Removed GlobalDefaultSetting?.getById(...)
10:32 AM Changeset [1636] by Gregory Vincic
Refs #193. Removed GelScanEvent?.getById(...)
10:31 AM Changeset [1635] by Gregory Vincic
Refs #193. Removed GelImageAnalysisEvent?.getById(...)
10:19 AM Changeset [1634] by Gregory Vincic
Refs #193. Removed FileType?.getById(...)
10:15 AM Changeset [1633] by Gregory Vincic
Refs #193. Removed Experiment.getById(...)
10:13 AM Changeset [1632] by Gregory Vincic
Refs #193. Removed Directory.getById, replacing its use with …
8:08 AM Changeset [1631] by olle
Refs #195. First step of refactoring of scroller page links. Logic for …
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