Timeline
Jul 4, 2007:
- 4:26 PM Ticket #228 (Is alpha3 out yet?) created by
- If yes, update the text for milestone:"Beta 1". If no, when is it due? …
- 4:17 PM ExtensionManual edited by
- Added code of a HelloWorld? extension. (diff)
- 4:09 PM ExtensionManual created by
- Initial revision
- 3:59 PM Changeset [1844] by
- Refs #214. Extensions can now be enabled for context sensitivity. See …
- 1:49 PM Changeset [1843] by
- Refs #214. Removed loadingExtensions diagram and unused variable in …
- 1:23 PM Changeset [1842] by
- Refs #214. External actions are now loaded by the ActionFactory?. All …
- 11:04 AM Changeset [1841] by
- Added suppressWarnings. Also added a TODO in the test class.
- 10:53 AM Changeset [1840] by
- Removed unused imports.
- 10:49 AM Changeset [1839] by
- Removed unused imports.
Jul 3, 2007:
- 1:15 PM Changeset [1838] by
- Code reformat
- 12:44 PM Changeset [1837] by
- Refs #219. Core test classes/files in api/core/test/ updated by …
- 11:01 AM Changeset [1836] by
- Moved FileLocatorTest? to test directory.
- 10:54 AM Changeset [1835] by
- Refs #219. Test properties template files test.properties.in in …
- 10:12 AM Changeset [1834] by
- Refs #219. Ant build file build.xml in plugin/test/ updated in class …
- 9:08 AM Changeset [1833] by
- Added svn properties.
- 9:07 AM Changeset [1832] by
- Refs #214. Refactored out file locating method into a FileLocator?. The …
Jul 2, 2007:
- 4:18 PM Changeset [1831] by
- Refs #214. Initial revision of ExtensionLoader?.
- 4:16 PM Changeset [1830] by
- Refs #214. Initial revision of ExtensionLoader?.
- 1:30 PM Changeset [1829] by
- Refs #219. Class/file plugins/TestRobotFileImportTest.java in …
- 12:55 PM Changeset [1828] by
- Refs #219. Ant build file build.xml in plugin/test/ updated: 1. …
- 12:53 PM Changeset [1827] by
- Refs #219. Ant build file build.xml in api/core/test/ updated: 1. …
- 12:44 PM Changeset [1826] by
- Refs #219. Test properties template file src/test.properties.in added …
- 12:28 PM Changeset [1825] by
- Refs #219. Added class/file PropertiesFile?.java to api/core/test, …
- 11:14 AM Changeset [1824] by
- Documented ActionFactory?.
- 10:44 AM Changeset [1823] by
- Added servlet startup diagram showing how the actions are found and …
- 9:46 AM Developers edited by
- Added section on UML diagram tools (diff)
- 9:42 AM Changeset [1822] by
- Added components diagram(drawn with violet). Get Violet eclipse plugin …
- 8:57 AM Changeset [1821] by
- dtd package is not empty. It just doesn't contain any java files.
- 8:47 AM Changeset [1820] by
- Removed empty packate org.proteios.core.templates
- 8:03 AM Changeset [1819] by
- Added packages overview diagrams to api/core/doc and api/waf/doc.
Jul 1, 2007:
- 2:57 PM Changeset [1818] by
- Removing empty package org.proteios.realm
Jun 30, 2007:
Jun 29, 2007:
- 2:33 PM Changeset [1817] by
- Documented ActionFactory? and ActionFactoryInterface?.
- 11:29 AM WikiStart edited by
- proteios1 pages move to new host (lev -> trac) (diff)
Jun 28, 2007:
- 2:56 PM Changeset [1816] by
- Added WAF package diagram.
- 2:35 PM Changeset [1815] by
- Added comments to AbstractAction?
- 11:27 AM Changeset [1814] by
- Corrected start/end figures in Event-1.uxf
- 10:48 AM Changeset [1813] by
- Documented waf/Event
- 9:49 AM Changeset [1812] by
- Refs #219. Added copy of plugins/mzdata/ApplicationTestSetup.java from …
- 9:13 AM Changeset [1811] by
- Refs #219. Update of plugin/test/: 1. Added ant build file build.xml. …
- 8:31 AM Changeset [1810] by
- Refs #219. Class/file PropertiesFile?.java in client/servlet/test/ …
Jun 27, 2007:
- 5:04 PM Changeset [1809] by
- Refs #219. Files and directories under test/src/org/proteios/core/ and …
- 4:06 PM Changeset [1808] by
- Refs #219. Adding new directories to api/core/test/src/ and …
- 3:48 PM Changeset [1807] by
- Added package documentation to waf/constraints and waf/dom/html.
- 2:27 PM Changeset [1806] by
- Fixed javadoc errors & warnings for api/waf when running ant doc.
- 2:05 PM Changeset [1805] by
- Added "package" target to client/servlet/build.xml which creates a war …
Jun 26, 2007:
- 3:01 PM Changeset [1804] by
- Refs #201. Update making it possible to delete Job items from GUI: 1. …
- 12:21 PM Changeset [1803] by
- Fixed scroller endpoint trouble where last page was not found.
- 12:11 PM Ticket #225 (Wrong view after sample generation) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 11:58 AM Changeset [1802] by
- Refs #225. Class/file action/sample/AddSample.java in client/servlet/ …
- 11:45 AM Changeset [1801] by
- Refs #225. Class/file action/project/ListSamplesInProject.java in …
Jun 25, 2007:
- 3:36 PM Ticket #221 (Add get function for retention time to spectrum interface and impl) closed by
- worksforme: Ticket closed as the requested functionality has been added.
- 3:19 PM Changeset [1800] by
- Removed unused/old gui classes.
- 2:29 PM Ticket #220 (mzData importer doesn't add cvParams anymore) closed by
- worksforme: Ticket closed as the support for annotations in mzData import and …
- 2:13 PM Changeset [1799] by
- Refs #220. Classes/files plugins/mzdata/io/MzDataExp*Block.java in …
- 2:08 PM Changeset [1798] by
- Refs #220. Class/file plugins/mzdata/io/MzDataExpCommonDc.java in …
- 1:55 PM Changeset [1797] by
- Refs #220. Class/file core/Annotator.java updated in public method …
- 1:46 PM Changeset [1796] by
- Class/file plugins/mzdata/io/MzDataImpCommon.java updated by …
- 1:40 PM Changeset [1795] by
- Refs #220. Classes/files plugins/mzdata/io/MzDataImp*Block.java …
- 1:40 PM Changeset [1794] by
- Refs #219. Removing empty test packages.
- 1:36 PM Changeset [1793] by
- Refs #219. Moving selenium tests to client/servlet/test/src
- 1:33 PM Ticket #169 (Show file directory in HitsReport - import) closed by
- fixed
- 1:32 PM Ticket #154 (Move table creation from GuiFactory to TableFactory) closed by
- fixed: (In [1792]) Fixes #154. All table related methods have been replaced …
- 1:32 PM Changeset [1792] by
- Fixes #154. All table related methods have been replaced by the …
Jun 21, 2007:
- 1:06 PM Changeset [1791] by
- Refs #195. Added javascript method addField. This enables us to glue …
- 11:40 AM Ticket #220 (mzData importer doesn't add cvParams anymore) reopened by
- Ticket reopened as some data is still missing after the fix in …
- 11:19 AM Changeset [1790] by
- Refs #221. Update to show retention time for a spectrum corresponding …
- 9:58 AM Changeset [1789] by
- Refs #221. Class/file io/PeakListFileImpl.java in api/core updated to …
- 9:50 AM Changeset [1788] by
- Refs #221. Interface/file io/SpectrumInterface.java in api/core …
Jun 20, 2007:
- 1:28 PM Changeset [1787] by
- Refs #219. Changed classpath in core/test/build.xml
- 11:18 AM Ticket #195 (Enhance scroller) closed by
- worksforme: Ticket closed as more page links have been added. If it is desired …
- 11:07 AM Changeset [1786] by
- Refs #219. Added dependency between client/servlet/test building and …
- 11:06 AM Ticket #187 (Add confirmation to clear hits) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 9:36 AM Changeset [1785] by
- Refs #219. Added batch running of tests in core/test/build.xml
- 9:31 AM Changeset [1784] by
- Refs #219. Fixed dupblicate copy of config files from servlet/conf …
Jun 19, 2007:
- 10:45 PM Ticket #220 (mzData importer doesn't add cvParams anymore) closed by
- fixed: (In [1783]) Fixes #220. Empty peaklists yielded null pointer execption …
- 10:45 PM Changeset [1783] by
- Fixes #220. Empty peaklists yielded null pointer execption since …
- 10:39 PM Ticket #191 (Avoid multiple copies of cvParams) closed by
- fixed: (In [1782]) Fixes #191. Corrected added parameter addition and added …
- 10:39 PM Changeset [1782] by
- Fixes #191. Corrected added parameter addition and added log messages …
- 4:40 PM Changeset [1781] by
- Refs #212. Classes/files action/news/NewNews.java and …
- 4:39 PM Changeset [1780] by
- Refs #212. Class/file action/hit/ViewActiveHit.java updated to use …
- 4:37 PM Changeset [1779] by
- Refs #212. Class/file action/file/GenericFormTest.java updated to use …
- 4:34 PM Changeset [1778] by
- Refs #212. Generic form creation updated to use form templates, and …
- 4:13 PM Changeset [1777] by
- Refs #212. Added two new interfaces and one class in gui/form/ to be …
- 2:39 PM Changeset [1776] by
- Refs #219. Moved action related tests into client/servlet/test.
- 2:02 PM Changeset [1775] by
- Removed unused package and classes in org.proteios.realm
- 1:49 PM Changeset [1774] by
- Refs #219. Moved org.proteios.gui tests into client/servlet/test
- 1:29 PM SettingUpEclipse edited by
- Adapted eclipse setup to the new directory structure. (diff)
- 1:21 PM Developers edited by
- Moved Eclipse IDE to the top as it's the starting point of a … (diff)
- 1:14 PM Changeset [1773] by
- Refs #219. Added junit-4.3.1.jar to api/external/test. Moved wav test …
- 12:38 PM Changeset [1772] by
- Refs #219. Created a separate build.xml for core/test directory. This …
- 10:46 AM Changeset [1771] by
- Refs #219. Moved javadoc generation from root build.xml into …
- 9:33 AM Changeset [1770] by
- Refs #219. ant package now does the 'ant clean compile hibernate dist' …
- 9:20 AM Changeset [1769] by
- Refs #219. Removed old test/lib directory.
- 9:02 AM Changeset [1768] by
- Removed link to javadoc. As the javadoc is now split up into different …
- 8:50 AM Changeset [1767] by
- Refs #219. Removed src/ from root directory.
Jun 18, 2007:
- 7:02 PM Changeset [1766] by
- Refs #188. Changed to require more decimals in pkl before using …
- 7:00 PM Changeset [1765] by
- Refs #209. Corrected command line options reading and added parameter …
- 3:55 PM Ticket #217 (Description fields generated by the FormFactory should be displayed as ...) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 3:53 PM Ticket #204 (Not possible to upload files using ftp-server) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 3:52 PM Ticket #199 (Not possible to login to ftp-server) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 3:52 PM Changeset [1764] by
- Refs #219. Moving org.proteios.plugins into plugin/src directory.
- 2:53 PM Changeset [1763] by
- Refs #219. Removed dependency between waf compilation and core api.
- 2:08 PM Changeset [1762] by
- Refs #219. Removed old source directories. Leaving only configuration …
Jun 16, 2007:
- 12:11 AM Changeset [1761] by
- Refs #219. Moved log4j and proteios config files to client/servlet/conf
- 12:08 AM Changeset [1760] by
- Refs #219. Moved ftp.properties.in to client/ftpd/conf
- 12:01 AM Changeset [1759] by
- Refs #219. Adding doclet libs
Jun 15, 2007:
- 11:52 PM Changeset [1758] by
- Refs #219. Removing start scripts for ftp server. They have been moved
- 11:50 PM Changeset [1757] by
- Refs #219.
- 11:50 PM Changeset [1756] by
- Refs #219. Adding last changes to core and client
- 11:49 PM Changeset [1755] by
- Refs #219. Removing libraries in test directory
- 11:48 PM Changeset [1754] by
- Refs #219. Removing old www directory
- 11:48 PM Changeset [1753] by
- Refs #219. Removing most from /src directory. First commit failed due …
- 11:45 PM Changeset [1752] by
- Removing FormFactory?, will add the new one shortly
- 11:41 PM Changeset [1751] by
- Refs #219. Removing old /lib dir. These libs have been added to …
- 11:39 PM Changeset [1750] by
- Refs #219. Removing servlet/www/WEB-INF
- 11:27 PM Changeset [1749] by
- Refs #219. Adding additional libraries
- 11:21 PM Changeset [1748] by
- Refs #219. Adding libraries to api/external
- 11:13 PM Changeset [1747] by
- Refs #219. Moving waf related files
- 11:11 PM Changeset [1746] by
- Refs #219. Moving api/core related files
- 11:02 PM Changeset [1745] by
- Refs #219. Adding servlet/www
- 11:00 PM Changeset [1744] by
- Refs #219. Major restructure is done. There are still files that need …
- 4:09 PM Ticket #227 (Plugins should be able to request parameters) created by
- Plugins should be able to request parameters. A generic form should be …
- 4:06 PM Changeset [1743] by
- Adding project restriction when looking for plates for the rare …
- 3:23 PM Changeset [1742] by
- Refs #83. Changed PKL validation so that empty files are not valid anymore
- 2:52 PM Changeset [1741] by
- Refs #209. Updated main() MsInspectPairFinder? to use correct file names
- 1:50 PM Ticket #226 (Sample quantity has no unit in GUI) created by
- Sample quantity has no unit in the GUI. Should be mg for samples, and …
- 1:49 PM Ticket #225 (Wrong view after sample generation) created by
- After generating a new sample the user is transferred to a view where …
- 1:45 PM Ticket #224 (Allow sample - gel linking) created by
- Should be possible to create gel from sample in GUI. And also to link …
- 1:44 PM Ticket #223 (Allow linking of pick list to gel) created by
- It should be possible to assign a gel picture + gel pick list / spot …
- 1:40 PM Ticket #222 (Hits table to gel linking) created by
- By clicking on a gel id in the hits table one should be able to view …
- 1:36 PM Ticket #221 (Add get function for retention time to spectrum interface and impl) created by
- Add a function: List<Double> getRetentionTimesInMinutes(List<Integer> …
- 1:30 PM Ticket #220 (mzData importer doesn't add cvParams anymore) created by
- Refs #104, Refs #191. MzData? importer seems not to add cv params (or …
- 8:58 AM Ticket #216 (Generate plate for hits report) closed by
- fixed: (In [1740]) Fixes #216. Added form for plate addition to hits
- 8:58 AM Changeset [1740] by
- Fixes #216. Added form for plate addition to hits
- 8:57 AM Changeset [1739] by
- Refs #216. Added action classes for manual addition of plate to hits report
Jun 14, 2007:
- 10:10 PM Changeset [1738] by
- Refs #219. Initial revision of api/core/build.xml. Still nothing is moved!
- 9:45 PM Changeset [1737] by
- Refs #219. Implemented test target in api/waf/build.xml
- 9:32 PM Changeset [1736] by
- Refs #219. Added initial build file for api/waf. Still nothing has …
- 9:08 PM Changeset [1735] by
- Refs #219. Initial revision of the new directory structure. Nothing …
- 2:32 PM Ticket #219 (Restructure directory layout) created by
- As the project is growing our directory layout feels cluttered. …
- 12:37 PM Changeset [1734] by
- Refs #217. Class/file gui/form/FormFactory.java updated in private …
- 10:59 AM Ticket #218 (Error message after login) created by
- This error meassage appears after login for all users (alpha3 …
- 10:20 AM Changeset [1733] by
- Refs #209. Added pair comparison plugin to install file
- 10:19 AM Changeset [1732] by
- Refs #209. Added plugin for generation of include lists from msInspect …
Jun 13, 2007:
- 9:37 PM Changeset [1731] by
- Removed System.out.println from Localizer and some other logging outputs.
- 4:14 PM Changeset [1730] by
- Changed level of logging for filter creation in HibernateUtil? from …
- 4:08 PM Changeset [1729] by
- Adding feature to use different proteios.config file at startup. …
- 2:17 PM Changeset [1728] by
- Refs #217. Class/file gui/form/FormFactory.java updated to use a …
- 10:11 AM Ticket #217 (Description fields generated by the FormFactory should be displayed as ...) created by
- As the text is usually large in that field it should be a …
Jun 12, 2007:
- 2:23 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) closed by
- worksforme: Ticket closed again as comment and test changes related to Date …
- 2:18 PM Changeset [1727] by
- Refs #213. Class/file action/file/GenericFormTestSheet.java updated by …
- 2:02 PM Changeset [1726] by
- Refs #213. Class/file gui/form/FormFactory.java updated in public …
- 1:57 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) reopened by
- Ticket reopened to add comment and test changes related to Date …
- 9:06 AM Changeset [1725] by
- Documented several methods related to VParam reading and writing in …
- 8:58 AM Changeset [1724] by
- Refs #187. Class/file action/hit/ClearHits.java updated in method …
- 8:46 AM Changeset [1723] by
- Refs #187. First revision of confirmation action. 1. Class/file …
Jun 8, 2007:
- 4:33 PM Ticket #215 (It should be possible to create and edit News items from GUI) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 4:32 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 4:30 PM Ticket #210 (ProjectKey for items created or uploaded via FTP should be set to that ...) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 4:28 PM Ticket #205 (Not possible for several users to log in to ftp-server simultaneously) closed by
- worksforme: Ticket closed as the desired functionality has been added.
- 3:58 PM Changeset [1722] by
- Refs #215. News table updated to support creation and editing of news …
- 3:15 PM Changeset [1721] by
- Refs #215. Class/file gui/table/TableFactory.java updated to support …
- 2:54 PM Ticket #216 (Generate plate for hits report) created by
- I should be possible to generate an empty plate for the hits report, …
- 2:44 PM Changeset [1720] by
- Refs #215. Class/file gui/table/TableFactory.java updated in private …
- 2:30 PM Changeset [1719] by
- Refs #215. Class/file gui/table/TableFactory.java updated in method …
- 2:04 PM Changeset [1718] by
- Refs #215. Class/file core/News.java updated in method void …
- 1:55 PM Ticket #215 (It should be possible to create and edit News items from GUI) created by
- It should be possible to create and edit News items from GUI. The …
Jun 7, 2007:
- 4:27 PM Changeset [1717] by
- Refs #213. Class/file action/file/ReadGenericForm.java updated in …
- 2:49 PM Ticket #214 (Extensions) created by
- Extending proteios gui enables us to streamline plugin configuration …
- 2:46 PM Changeset [1716] by
- Removed unused code from ActionFactory?.
- 1:01 PM Changeset [1715] by
- Refs #213. Class/file se/lu/thep/waf/constraints/VDate.java updated in …
- 12:57 PM Changeset [1714] by
- Updated build file, setting the version for alpha3 release.
Jun 5, 2007:
- 4:50 PM GelBasedReport edited by
- Added specific info for PLGS to mzData conversion (diff)
- 4:06 PM Changeset [1713] by
- Refs #213. Generic form creation updated with support for Date …
- 3:15 PM Changeset [1712] by
- Refs #213. Class/file gui/form/FormFactory.java updated in method …
- 2:54 PM Ticket #213 (Update of generic form creation with support of Date variables etc.) created by
- Generic form creation should be updated to support the following …
- 1:13 PM Changeset [1711] by
- Added tests for all date formats in VDate.Format enumeration.
- 10:40 AM Changeset [1710] by
- Typo in definition of TIMESTAMP corrected.
- 10:16 AM Changeset [1709] by
- Added support for valid date parameters.
Jun 4, 2007:
- 3:25 PM Changeset [1708] by
- Refs #188. Instrumenet info can now be added from xml file to the PLGS …
- 12:40 PM GelBasedReport edited by
- (diff)
- 12:38 PM GelBasedReport edited by
- (diff)
- 12:34 PM GelBasedReport edited by
- (diff)
- 12:16 PM GelBasedReport edited by
- (diff)
- 12:10 PM UserGuide edited by
- (diff)
- 12:08 PM GelBasedReport created by
- First version of gel reporting
- 11:03 AM UserGuide edited by
- (diff)
- 10:15 AM UserGuide edited by
- (diff)
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